New report on Great Barrier Reef shows coral cover increases before onset of serious bleaching, cyclones

Coral cover has increased in all three regions on the Great Barrier Reef and is at regional highs in two of the three regions, according to a report by the Australian Institute of Marine Science (AIMS). But the results come with a note of caution.

Most of the underwater surveys contributing to these findings published today, were conducted before and during the recent mass bleaching event, one of the most extensive and serious on record, and have not yet captured how many corals survived or died following the bleaching.    

Surveys in the Central region were also completed before the passage of tropical Cyclone Jasper in December 2023.    

AIMS' Long-Term Monitoring Program (LTMP) leader Dr Mike Emslie said coral cover increases were a positive sign but did not reflect the potentially destructive consequences of the 2024 mass bleaching event. 

"We saw evidence of early onset mortality, particularly in the Southern region, but the full picture of mortality was not yet apparent during this year's surveys," he said.

"While bleached corals are very stressed, they are still alive and are recorded as live coral on our surveys. 

"Some types of corals can remain bleached for months, remaining on a knife edge between survival and death. This is why returning and repeating surveys of the reefs in this vast, complex and dynamic system is so important. This year's results serve as a very important reference against which to measure the impacts of the summer's events."

The next (LTMP) survey season recommences in September and will capture impacts on coral cover from this summer's mass bleaching event and the cyclones, with a full assessment complete by mid-2025.  

"Climate change remains the greatest threat to the Reef because it drives these mass bleaching events. This most recent one was the fifth such event since 2016. These more frequent and extensive marine heatwaves will lead to shortened 'windows' for coral recovery. Recent gains, while encouraging, can be lost in a short amount of time," Dr Emslie said.

Surveys were conducted at 94 Reefs spread through the Northern, Central and Southern Great Barrier Reef between August 2023 and June 2024.    

The Report recorded the following average hard coral coverage:    

•     Northern region (north of Cooktown) -- 39.5%, up from 35.8% last year;    
•     Central region (Cooktown to Proserpine) -- 34%, up from 30.7%;   
•     Southern region (south of Proserpine) -- 39.1%, up from 34%.   

The AIMS report finds that small rises in coral cover this year bring the Northern and Central regions to their highest levels in 38 years of monitoring.  

The surveys also found that crown-of-thorns starfish outbreaks have persisted on some reefs in the Southern region.    

The long term monitoring team surveyed reefs off Townsville after the passage of tropical Cyclone Kirrily in late January, finding evidence of storm damage and declines in hard coral cover ranging from 6% to 10% at Kelso, John Brewer, Helix and Chicken Reefs. Other reefs appear to have escaped with little impact.    

AIMS Research Program Director Dr David Wachenfeld said the regional increases in coral cover are encouraging, showing the Reef's capacity for recovery after reaching their lowest levels within the last 15 years. However, climate change and other disturbances mean this recovery is fragile and Reef resilience is not limitless.    

"In many ways the Reef has had some lucky escapes in recent years. The 2020 and 2022 mass bleaching events had levels of heat stress that were not as intense as the 2016 and 2017 events or the 2024 event. Coupled with very few other events causing widespread coral death, that has led to the levels of coral cover increase we have seen," he said.   

"But the frequency and intensity of bleaching events is unprecedented, and that is only forecast to escalate under climate change, alongside the persistent threat of crown-of-thorns starfish outbreaks and tropical cyclones."    

Aerial surveys undertaken by AIMS and the Great Barrier Reef Marine Park Authority in February and March found bleached corals in the shallows of 73% of reefs surveyed across all three regions.  

In recent weeks, AIMS scientists in separate monitoring programs observed substantial mortality in reefs that were particularly hard hit by the 2024 event.  

"We are only one large scale disturbance event away from a reversal of the recent recovery. The 2024 bleaching event could be that event -- almost half of the 3000 or so reefs that make up the marine park experienced more heat stress than ever recorded," Dr Wachenfeld said.    

"We still don't know how much mortality this event has caused. Our monitoring over the next 12 months will help us to understand how this bleaching event stacks up against the others in the last decade." 

AIMS CEO Professor Selina Stead said AIMS was prioritising research to develop scientific solutions to boost reef resilience under a warming climate.   

"Climate change is increasing pressure on reef systems around the world," she said.  "The 2024 bleaching event was part of the fourth global bleaching event, announced in April.

"These vitally important ecosystems that millions rely upon need strong greenhouse gas emissions reduction, science-based management of local pressures, and input from multiple fields of research if they are to endure.

"At AIMS we are developing a toolbox of interventions to help reefs adapt to and recover from the effects of climate change."

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Protecting coral 'nurseries' as important as safeguarding established coral reefs

When imagining corals, the picture that comes to mind is usually a stationary one: a garden of rock-like structures covering sections of the ocean floor.

Reef conservation efforts typically focus on preserving established coral and protecting them from known stressors such as pollution, overfishing and runoff from coastline populations.

However, new research near Miloliʻi in the southwestern part of the island of Hawaii, shows that identifying and protecting marine ecosystems both down-current and up-current of coral reefs, specifically areas where coral larvae are more likely to survive and thrive, is crucial to future coral conservation and restoration efforts -- especially as reefs face increasing pressure from the devastating effects of climate change.

The research, completed by Arizona State University scientists and their collaborators, appears in the current issue of Proceedings of the National Academy of Sciences.

Rachel Carlson, an ASU affiliate scientist and the study's first author, along with Greg Asner, director of ASU's Center for Global Discovery and Conservation Science, Larry Crowder, professor of oceans at Stanford University, and Robin Martin, associate professor with the ASU School of Ocean Futures in the Julie Ann Wrigley Global Futures Laboratory, collaborated on the project.

Additionally, the ʻĀkoʻakoʻa Reef Restoration Program, a regional effort that fuses cultural leadership, multi-modal education, advanced science and government engagement, backed the research.

Carlson says this type of collaborative work -- partnerships combining local, Indigenous knowledge and Western science -- is crucial to mapping out a future that ensures the survival of coral populations.

"There's a lot of Indigenous knowledge about coral spawning and fish populations in West Hawaii. In this study, we addressed an open question: How connected are coral populations between embayments along this coastline?" Carlson said. "What we essentially found is that the major factors in helping the coral keiki, known as larvae, settle down and survive are the nearshore current and the structure of the reef."

The study shows that the larvae more often settle in and inhabit areas with large boulders and uneven surfaces, or "chunky features," said Carlson, who is also a Chancellor's Postdoctoral Fellow at the UC Davis Bodega Marine Lab. Adult coral will spawn millions of larvae into the water column and those larvae prefer to settle in places with large knolls and boulders.

This discovery is good news: These kinds of seafloor features have been mapped via ASU's Global Airborne Observatory, a highly specialized aircraft that uses several types of remote sensing technologies to track both underwater and land-based habitats. This means that the researchers have the capability to help find and map priority reefs for conservation and restoration.

"This is foundational research in several important ways," said Asner, the study's senior author. "First, it gives us an understanding of the connectivity of different parts of reefs along our coastline and tells us the level of connectivity in the context of the birth, settlement and growth of corals miles apart. Second, our unique remote sensing capabilities can identify reef sites where coral restoration could be most viable in the future. Finally, these findings provide a critical building block for future restoration efforts by our ʻĀkoʻakoʻa team and collaborators."

The group's goal is to preserve and restore vitality to Hawaii's coral reefs and coastline health.

"We as lineal descendants of the Miloliʻi area have always relied on the reef for our ʻOhana (families). Our reef is our sustenance and is of enormous cultural value to us," said Kaʻimi Kaupiko, president of the nonprofit organization Kalanihale, which manages the Miloliʻi Community-Based Subsistence Fishing Area where the study took place.

Asner said the intertwined nature of reefs along Hawaii's coastlines is crucial to consider in reef protection strategies. Narrowing in on one area without consideration for the reproductive corridors of corals, he said, would be akin to worrying about planting trees in a certain place and not thinking about the forest as a whole. This sentiment is echoed by Martin, who said reef connectivity is an underutilized tool in reef restoration efforts globally.

"In Hawaii and worldwide, we're trying to figure out where we should place protections and restore areas to help reefs," Martin said. "This study is highly technical, but it needs to be part of that conversation and part of that work, because if you aren't protecting the upcurrent reefs, you are cutting off important reproductive areas."

Martin said reef restoration could, for example, expand a protected area of reefs beyond just the spots that have more dense coral coverage on the ocean floor; protection efforts would also be needed in the upcurrent path that the coral larvae traveled through before they settled in a new location.

Asner adds that this research could very well help conservation efforts expand to much greater distances than have been achieved previously.

"These kinds of studies of connectivity, flow and movement are needed because the west Hawaii island coastline is longer than the whole circumference of any other island," Asner said. "We have a lot of degraded reefs along our coastline, so knowing where and how to help baby corals thrive is fundamental to the ʻĀkoʻakoʻa restoration effort."

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Study identifies key algae species helping soft corals survive warming oceans

Scleractinian corals, or hard corals, have been disappearing globally over the past four decades, a result of climate change, pollution, unsustainable coastal development and overfishing. However, some Caribbean octocorals, or soft corals, are not meeting the same fate.

During a two-year survey of soft corals in the Florida Keys, Mary Alice Coffroth, professor emerita of geology at the University at Buffalo, along with a small team of UB researchers, identified three species of octocorals that have survived heat waves. While the coral animal itself may be heat tolerant, Coffroth said that her team concluded that the symbiotic algae inside the coral serve as a protector of sorts.

"The resistance and resilience of Caribbean octocorals offers clues for the future of coral reefs," Coffroth said.

A recent paper outlining their research, "What makes a winner? Symbiont and host dynamics determine Caribbean octocoral resilience to bleaching," was published on Nov. 22, in Science Advances by the American Association for the Advancement of Science (AAAS).

Coffroth is the lead author on the study she conducted between 2015 and 2017 with graduate student Louis Buccella, undergraduates Katherine Eaton and Alyssa Gooding and technician Harleena Franklin. Howard Lasker, professor emeritus in the departments of Environment and Sustainability and Geology, also contributed to the study.

Algae helps corals survive heat waves

Both hard and soft coral depend on a nutritional symbiosis with single-celled algae living within their tissues. Warmer waters can cause the symbiosis to break down, resulting in a loss of the algal symbionts, which turns the corals white, a phenomenon known as bleaching.

"Bleaching can lead to coral death," said Coffroth, who has studied coral reefs in the Florida Keys since 1998, including a more recent study in 2020-21. "It's unclear if the algae leave or are ejected from the coral.

"In this study, we examined possible mechanisms that contribute to the heightened resistance and resilience of three octocoral species in the face of the recurring marine heat waves leading to bleaching events," Coffroth said, noting that this is the first study that follows both symbiont genetic makeup and density in Caribbean octocorals before, during and after a major heat wave.

By and large, Caribbean octocorals harbor symbionts within the genus Breviolum, she said. And this symbiont is helping to make the octocoral better able to handle the rising heat.

"The Breviolum densities declined during the heatwaves but recovered quickly," she explained. "Octocoral mortality was low compared to their scleractinian relatives."

2014 El Niño prompted research

When Coffroth saw bleached corals during the 2014 El Niño and knew that a similar event was predicted for the following summer, she applied for a Rapid Response Research (RAPID) grant from the National Science Foundation. She was awarded $56,305 and with her master's student, Buccella, conducted the study in the Keys, following the fate of the octocorals and their symbionts for 28 months.

She and other members of the team made trips to the Keys Marine Lab at the Florida Institute of Oceanography to study the octocorals in the spring and fall of 2015 and 2016 and spring and summer of 2017, recording coral coloration and taking samples to study density of the symbionts and their genetic identity.

"We knew it was critical to follow individual colonies across an event with long-term monitoring of both host and symbiont responses," she said, "and to examine the response at least at the level of symbiont species, if not the genotype, to identify potentially resilient species."

Climate change moving faster than coral evolution

Although the study began almost a decade ago, Coffroth said the findings are extremely relevant because they mirror what is happening right now, with the continuing warming of ocean waters, increased storms and major bleaching events across the globe.

"There is evidence that corals are withstanding higher temperature now than they did in the 1960s," she said. "That signals evolution, but the problem is that climate change is moving too fast, faster than evolution."

In addition to their beautiful aesthetics, coral reefs provide many benefits to the planet and its inhabitants, including barriers to coastal regions that are susceptible to hurricanes and other tropical storms; habitat for large fish such as grouper and snapper; a tourist destination for snorkeling, fishing and diving; and a source for bioactive compounds used in drugs to treat inflammation and certain kinds of cancer.

"If you a see picture of coral reefs when I started diving in the 1970s and compare it with one now, it makes you want to cry," she said. "The change is just amazing."

While she noted that this study has some important observations, further study is needed to better understand what is happening to the ecosystem.

"I'm seeing species bleach that have never bleached before but also ones showing more resilience," she said. "There is a lot of variation within both the animal and symbiont genera. We need to understand the variation."

The hope is to continue research into coral reef relationships and the durability of the symbiotic algae while also taking steps to halt the damage to the environment by human action, such as overfishing and the burning of fossil fuels.

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Heat tolerant coral may trade fast growth for resilience

Algae living within the soft tissue of coral supply much of the energy needed by their hosts, and some symbiotic algae help coral withstand warmer water better than others. In a recently published study led by the University of Hawai'i at Manoa, researchers found that there was a tradeoff for corals dominated by the thermally sensitive algae -- they have higher growth, but only in cooler water.

"As the ocean continues to warm, understanding how symbionts and environmental factors affect coral growth and health will help predict reef futures and inform conservation interventions where coral stocks are selected for specific traits or symbionts," said Shayle Matsuda, a doctoral student at the Hawai'i Institute of Marine Biology in the UH Mānoa School of Ocean and Earth Science and Technology at the time of the research.

The study was co-led by Matsuda, now a postdoctoral fellow at the Shedd Aquarium, and Mariah Opalek, who conducted the experiment for her undergraduate thesis at UH Mānoa. The research team investigated whether rice corals hosting symbiotic algae that can tolerate warmer water may grow more slowly, which could impact survivorship and competition for space on the reef, compared to coral hosting symbionts that are more susceptible to bleaching when ocean waters warm.

Over a two-month study period, the researchers measured the growth of rice corals dominated by heat tolerant or heat sensitive symbiotic algae. Additionally, they tested growth across decreasing light levels to see if the tradeoff between growth and tolerance to warm water would be affected by light, which is a major driver of the distribution of these symbionts in Kāneʻohe Bay, Hawai'i.

"This research shows us the complexity of coral growth on a reef," said Opalek, who is now a grant support assistant at Kaua'i Community. "A coral's competitive advantage could be lost in a matter of a few degrees depending on what type of symbiont they associate with."

During the first month, when water temperatures were warmer, the symbiont present did not affect growth. However, over the cooler second month, corals with heat sensitive algae grew up to 77% faster than corals dominated by heat tolerant algae, and this growth advantage increased in higher light treatments, which correlates to shallower depths on a reef.

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World's deepest coral calcification rates measured off Hawaiian Islands

In the waters off the Hawaiian Islands, rates of calcification were measured in the deepest coral colonies and reported recently in a study led by a University of Hawai'i (UH) at Manoa oceanographer.

Reef building corals require light for photosynthesis to build the reef structure through calcification, but available light declines quickly with increasing water depth. Below about 200 feet, calcification rates for light-dependent corals had previously not been measured.

In the new study published in Coral Reefs, Samuel Kahng, lead author and graduate affiliate faculty of oceanography in the UH Manoa School of Ocean and Earth Science and Technology (SOEST), reported the first calcification rates from corals (Leptoseris spp.) in Hawai'i at depths of 230-360 feet.

"In addition to being from the deepest coral analyzed, these are by far the lowest calcification rates ever measured for healthy, light-dependent corals in their natural habitat," said Kahng. "These rates are 20-40 times slower than observed in shallow water corals."

Leptoseris spp. dominate the coral community in deep, low-light zones throughout the Indo-Pacific region. This species of coral exhibits a strategic approach to expanding the surface area with which it captures downwelling light -- they form very thin horizontal plate-like skeletons to maximize the area that can be built by their very low calcification rates. Kahng and colleagues published a previous study revealing that the lateral growth rates of these plate-like skeletons are unexpectedly high, given the low light availability.

"The corals' ability to quickly grow horizontal surface area is impressive, especially given the low calcification rates," said Kahng. "What this points to is the incredibly efficient use of calcification."

Because Hawai'i has such clear water, coral reef ecosystems extend offshore to extreme depths, with specialized light-dependent coral communities as deep as 500 feet.

"Hawai'i has much more vertical habitat compared to other coral reef ecosystems around the world," said Kahng. "These deep 'mesophotic' coral ecosystems can cover more habitat area than shallow water coral reefs. However, the general public rarely see them, so they present unique ecosystem management and conservation challenges."

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Scientists investigate the evolution of animal developmental mechanisms, show how some of Earth's earliest animals evolved

Lacking bones, brains, and even a complete gut, the body plans of simple animals like sea anemones appear to have little in common with humans and their vertebrate kin. Nevertheless, new research from Investigator Matt Gibson, Ph.D., at the Stowers Institute for Medical Research shows that appearances can be deceiving, and that a common genetic toolkit can be deployed in different ways to drive embryological development to produce very different adult body plans.

It is well established that sea anemones, corals, and their jellyfish relatives shared a common ancestor with humans that plied the Earth's ancient oceans over 600 million years ago. A new study from the Gibson Lab, published in Current Biology on June 13, 2023, illuminates the genetic basis for body plan development in the starlet sea anemone, Nematostella vectensis. This new knowledge paints a vivid picture of how some of the earliest animals on earth progressed from egg to embryo to adult.

"Studying the developmental genetics of Nematostella is sort of like taking a time machine into the very distant past," said Gibson. "Our work allows us to ask what life looked like long ago -- hundreds of millions of years before the dinosaurs. How did ancient animals develop from egg to adult, and to what extent have the genetic mechanisms that guide embryonic development endured across millennia?"

Most contemporary animals, from insects to vertebrates, develop by forming a head-to-tail series of segments that assume distinct identities depending on their position. Within a given segment, there is a further axis of polarity that informs cells whether they are at the front or back of the segment. Collectively, this is referred to as segment polarization.

Shuonan He, Ph.D., a former predoctoral researcher from the Gibson Lab, uncovered genes involved during development of the sea anemone, Nematostella vectensis, that guide the formation of segments and others that direct segment polarity programs strikingly similar to organisms higher up the evolutionary tree of life, including humans.

"The significance is that the genetic instructions underlying the construction of extremely different animal body plans, for example, a sea anemone and a human, are incredibly similar," said Gibson. "The genetic logic is largely the same."

This new study builds upon a 2018 study published in Science from the Gibson Lab that showed that sea anemones have an internal bilateral symmetry early in development with eight radial segments. The study demonstrated that Hox genes -- master development genes that are crucial for human development -- act to delineate boundaries between segments and likely had an ancient role in segment construction.

The team's latest finding explores how segments form and what accounts for differences in their identities. Using spatial transcriptomics, or the differences in gene expression between segments, the team discovered hundreds of new segment-specific genes. These include two crucial genes that encode transcription factors that govern segment polarization under the control of Hox genes and are required for the proper placement of sea anemone muscles.

The astonishing diversity of organisms on Earth can be compared to the assembly of Legos. "Whether you construct a dinosaur, a sea anemone, or a human, many of the core genetic building blocks are largely the same despite drastically different animal forms," said Gibson.

This is the first time that scientists have evidence of a molecular basis for segment polarization in a pre-bilaterian animal. While extensively studied in bilateral species like fruit flies and humans, the idea that cnidarian animals possess segmentation was unexpected. Now, the team has evidence that these segments are also polarized.

"This provides further evidence that investigating a broad diversity of animals can have direct implications for understanding general principles, including those which apply to human biology," said Gibson. "Going one step further, by understanding the logic of sea anemone development and comparing it to what we see in vertebrates, we can also extrapolate back in time to understand how animals likely developed hundreds of millions of years ago."

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Global macrogenetic map of marine habitat-forming species

Species known as marine habitat-forming species -- gorgonians, corals, algae, seaweeds, marine phanerogams, etc. -- are organisms that help generate and structure the underwater landscapes. These are natural refuges for other species, and provide biomass and complexity to the seabeds. But these key species in marine ecosystems are currently threatened by climate change and other perturbations derived from human activity. Now, a study published in the journal Global Ecology and Biogeography warns that even in the marine protected areas (MPAs) the genetic diversity of structural species is not protected, although it is essential for the response and adaptation of populations to changes that alter the natural environment.

The study was carried out by Laura Figuerola-Ferrando, Cristina Linares, Ignasi Montero-Serra and Marta Pagès-Escolà, from the Faculty of Biology of the University of Barcelona and the Biodiversity Research Institute of the UB (IRBio); Jean-Baptiste Ledoux and Aldo Barreiro, from the Interdisciplinary Centre of Marine and Environmental Research (CIIMAR) in Portugal, and Joaquim Garrabou, from the Institute of Marine Sciences (ICM-CSIC).

Genetic diversity is also a component of biodiversity

Traditionally, marine biodiversity management and conservation plans have considered factors such as species richness. Genetic diversity -- another major component of biodiversity -- reflects the genetic variation that exists among organisms of the same species and is a determining factor in the adaptive capacity of populations and their survival. Despite its importance, genetic diversity has so far been overlooked in management and conservation plans.

"Genetic diversity plays a key role in enhancing the ability of species, populations and communities to adapt to rapid environmental changes resulting from climate change and thus increase their resilience," says researcher Laura Figuerola-Ferrando, first author of the study.

"However, -- she continues -- so far, the vast majority of marine protected areas are implemented based on the presence of several species and habitats, without considering their genetic diversity. Another example would be the red list of the International Union for Conservation of Nature (IUCN), which does not consider genetic diversity either."

"In recent years, the need to focus conservation efforts on the protection of genetic diversity has been reinforced. Technological progress in the massive development of different techniques to determine genetic diversity (for example, through the use of microsatellites or small DNA fragments), as well as their affordable cost, can help to include genetic diversity in management and conservation plans," says the researcher from the Department of Evolutionary Biology, Ecology and Environmental Sciences of the UB.

From the northwest Atlantic to the Gulf of Guinea

The study applies macrogenetic techniques to identify general genetic patterns of diverse marine species at large spatial scales. The authors have analyzed data from a global database containing genetic diversity information (based on microsatellites) for more than 9,300 populations of 140 species in different marine regions around the globe.

The results outline a reference scenario of genetic patterns in marine habitat-forming species (corals, macroalgae, marine phanerogams, etc.) of potential interest for improving marine life management and conservation plans.

The northwest Atlantic provinces and the Bay of Bengal are the regions where the highest genetic diversity in marine landscape species has been identified. Quite high values (above the global average) have also been identified in the Mediterranean. In contrast, the marine provinces with the lowest values of genetic diversity are the Gulf of Guinea and the southwest Atlantic.

The findings also indicate a positive correlation between genetic diversity and species richness of both animal and plant marine habitat-forming species. However, the paper warns of a worrying result: the Network of Marine Protected Areas (RAMP) in the large oceanic ecoregions does not preserve areas where the genetic diversity of marine habitat-forming species is highest.

"What we have seen is that what is not being protected in MPAs is genetic diversity. In the study, the initial hypothesis was that within these areas there would be greater genetic diversity, but this has not been the case. In fact, we have seen, at a global level, that there are no differences in genetic diversity between inside and outside the MPAs," notes Laura Figuerola-Ferrando, who is doing her doctoral thesis under the supervision of Cristina Linares (UB) and Joaquim Garrabou (ICM-CSIC).

A new pattern of equatorial biodiversity at the poles

The authors have also identified a specific pattern in the distribution of genetic diversity of the marine habitat-forming species that differs from the traditional models known to date. "This is a bimodal latitudinal pattern: it is a complex biogeographic model and it implies that if we model how the genetic diversity of these species varies with latitude, we find two peaks in temperate zones and a small dip in genetic diversity at the equator," notes the ICREA Academia professor Cristina Linares (UB-IRBio), one of the coordinators of the study together with Jean-Baptiste Ledoux (CIIMAR).

This scientific discovery is relevant because until a few decades ago it was considered that the distribution of biodiversity on the planet followed a unimodal pattern, that is, it had maximum values at the equator and decreased towards the poles. "This is not always the case, especially in terms of species diversity in marine ecosystems. For example, in the case of benthic species, this pattern is biomodal rather than unimodal in terms of both species richness and genetic diversity," explains Cristina Linares.

"In our study, the bimodal latitudinal pattern is influenced by taxonomy: in the used model, we found statistically significant differences between animal species (more genetic diversity) and plant species (less genetic diversity). Furthermore, if we explore the latitudinal pattern separating animal and plant species, we can see that a bimodal pattern continues to be observed in animals, but the same cannot be said for plants," adds researcher Jean-Baptiste Ledoux (CIIMAR).

Genetic diversity: improving conservation management plans

The conclusions of the work recall the need to include the genetic diversity of populations in biodiversity management and conservation plans on the planet. "The importance of having genetic diversity in biodiversity management and conservation plans has just been reinforced with the 'Kunming-Montreal Global Biodiversity Framework' within the Convention on Biological Diversity (CBD/COP/15/L25, 2022). In this context, we believe that the baseline on genetic diversity patterns in marine habitat-forming species defined as our work can be very relevant," notes Jean-Baptiste Ledoux.

This study also reveals that the Mediterranean and Atlantic regions are among the most present in the scientific literature used in this work on macrogenetic patterns of deep-sea structural species.

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Coral reefs in the Eastern Pacific could survive into the 2060s

Scientists at the University of Miami Rosenstiel School of Marine, Atmospheric, and Earth Science found that some reefs in the tropical Pacific Ocean could maintain high coral cover into the second half of this century by shuffling the symbiotic algae they host. The findings offer a ray of hope in an often-dire picture of the future of coral reefs worldwide.

While global warming is causing the loss of coral reefs globally, scientists believe that some corals are increasing their tolerance to heat by changing the symbiotic algae communities they host, which through photosynthesis provide them with the energy they need to live.

"Our results suggest that some reefs in the eastern tropical Pacific, which includes the Pacific coasts of Panama, Costa Rica, Mexico, and Colombia, might be able to maintain high coral cover through the 2060s," said coral biologist Ana Palacio-Castro, lead author of the study, alumna of the Rosenstiel School, and a postdoctoral associate at the school's Cooperative Institute for Marine and Atmospheric Studies. "However, while this may be seen as good news for these reefs, their survival may not continue past that date unless we reduce global greenhouse gas emissions and curtail global warming on a larger scale."

Shallow coral reefs in the eastern tropical Pacific Ocean are predominantly built by branching corals in the genus Pocillopora, which are extremely important for the reefs in the region. The microscopic algae they host in their tissue harvest light to help the coral produce energy to grow. The loss of these symbiotic algae causes the coral to turn white, or bleach, and the coral struggles to meet their energy needs, which can often prove fatal.

To better understand how corals improved their tolerance to heat stress, the researchers examined over 40 years' worth of coral reef-monitoring data from Panama, one of the longest datasets of its kind in the world. They analyzed temperature, coral cover, bleaching and mortality data spanning three ocean heatwaves -- in 1982-1983, 1997-1998, and 2015-2016 -- along with data on algal symbiont community data during the last two.

The analysis showed that the 1982-83 heatwave significantly reduced coral cover on the reef, but the effects of the 1997-98 and 2015-16 El Niño were milder, especially for corals in the genus Pocillopora -- sometimes known as cauliflower coral -- the predominant reef-building coral in the eastern tropical Pacific. They also confirmed that during strong ocean heatwaves, the heat-tolerant alga Durusdinium glynnii becomes increasingly common in this particular lineage of corals, allowing them to better withstand periods of elevated temperatures. When combined with climate projections of future heat stress, the reefs that were predominantly composed of Pocillopora corals and that hosted this heat-tolerant alga were found to be better equipped to survive and maintain high levels of coral cover well into the second half of the current century, indicating that some reef systems may be more resilient to warming than previously thought.

"This study shows that there are some unusual reefs that may be able to survive for several decades as a result of their ability to shuffle symbionts," said Andrew Baker, professor of marine biology and ecology at the Rosenstiel School, and senior author of the study. "While we don't think that most reefs will be able to survive in this way, it does suggest that vestiges of our current reefs may persist for longer than we previously thought, although potentially with many fewer species. Coral reefs are incredibly valuable natural assets, providing coastal protection and fisheries benefits, and supporting many local communities. We can still make a difference by protecting them."

Read more at Science Daily

Palau's Rock Islands harbor heat-resistant corals

Ocean warming is driving an increase in the frequency and severity of marine heatwaves, causing untold damage to coral reefs. Tropical corals, which live in symbiosis with tiny single celled algae, are sensitive to high temperatures, and exhibit a stress response called bleaching when the ocean gets too hot. In the last 4 decades, marine heatwaves have caused widespread bleaching, and killed millions of corals. Because of this, a global search is underway for reefs that can withstand the heat stress, survive future warming, and act as sources of heat-tolerant coral larvae to replenish affected areas both naturally and through restoration.

Now, scientists studying reefs in Palau, an archipelago in the western tropical Pacific, have identified genetic subgroups of a common coral species that exhibit remarkable tolerance to the extreme heat associated with marine heatwaves. Further, the scientists found evidence that larvae from these corals are traveling from their birthing grounds deep in Palau's lagoons, to the outer reef, where they survive and grow, and maintain their heat tolerance.

Understanding both the underlying mechanisms that facilitate heat tolerance of these corals, as well as the dispersal capabilities of their larvae will go a long way toward enhancing coral reef conservation and restoration efforts in the 21st century ocean, according to scientists at the Woods Hole Oceanographic Institution (WHOI) who led the research.

In Palau's main lagoon, a network of very ancient, fossilized reefs has been uplifted to form a series of mountains known as the Rock Islands. These formations slow water flow in and around them, creating localized environments in which the water temperatures are consistently higher than other areas of Palau's reefs.

Scientists sampled the keystone coral species Porites lobata (lobe coral) across Palau, including the Rock Islands. They took skeletal biopsies and examined the cores for stress bands, which are telltale signs of bleaching, a stress response corals have to high temperatures. They found corals from the Rock Islands bleached less during the intense 1998 heatwave than corals from other areas of the reef, indicating enhanced thermal tolerance.

Scientists then investigated the genetics of the corals and discovered four distinct lineages within the same species. Within the warmer Rock Islands, certain lineages, designated as "LB" and "RD" lineages, were much more common. The scientists were able to match the genetics of each coral with its own bleaching history and found that fewer individuals from the "LB" and "RD" lineages bleached during 1998, indicating enhanced thermal tolerance.

Remarkably, the scientists found the LB lineage was not restricted to the Rock Islands. They found some LB colonies also living on the cooler outer reefs. An examination of the bleaching histories of these colonies again revealed fewer stress bands, indicating that they maintained the thermal tolerance characteristic of their relatives in the Rock Islands.

"This suggests that the Rock Islands provide naturally tolerant larvae to neighboring areas," the scientists write in the paper titled "Palau's warmest reefs harbor thermally tolerant corals that thrive across different habitats," published in Communications Biology, a journal published by Nature. "Finding and protecting such sources of thermally-tolerant corals is key to reef survival under 21st century climate change."

"As oceans worldwide continue to warm, corals derived from extreme habitats will be at a competitive advantage and may enable the survival of otherwise vulnerable reefs," the authors continue. "Identifying and safeguarding natural breeding grounds of environmentally tolerant corals that can thrive under future climate conditions will be fundamental to the persistence of coral reef ecosystems worldwide in the coming decades."

"We found that some of Palau's reefs with the highest temperatures have corals that are more tolerant than one would expect," said the paper's lead author Hanny Rivera, a graduate of the MIT-WHOI Joint Program. Rivera, who conducted this work as part of her Ph.D. and postdoctoral research, is currently an associate director of business development at Ginko Bioworks. "In addition, they are genetically distinct from the same corals found in other parts of Palau, which suggests that there has been natural selection for hardier corals in these regions.."

Paper co-author Michael Fox added that the study is particularly exciting because it combines coral genetics with historical records of bleaching preserved in their skeletons to shed light on how corals from extreme habitats with high temperature tolerance can be dispersed across a reefscape. "This integrated perspective is essential for improving projections of coral communities in a warming ocean," said Fox, who was a postdoctoral scholar at WHOI during the research for this paper. He currently is an assistant research professor in the Red Sea Research Center at King Abdullah University of Science and Technology in Thuwal, Saudi Arabia.

The Palau research is directly related to the Super Reefs initiative WHOI launched with The Nature Conservancy and Stanford University to locate coral communities that can withstand marine heat waves, and work with local communities and governments to protect them.

"This work is the scientific basis for the Super Reefs initiative," said paper co-author Anne Cohen, a scientist at WHOI and Rivera's advisor on the study. "The Palau research demonstrates that Super Reefs exist and also provides actionable science knowledge that can be used to support their protection."

Cohen noted that there are other coral reefs, not just in Palau, where coral communities have not bleached as severely as scientists predicted based on the levels of thermal stress. "When we find the coral communities that are heat-tolerant or bleaching-resistant, and we protect them from other stresses that can kill them -- like dynamiting, overfishing, or coastal development -- they will produce millions of larvae that will travel on the currents, outside of their places of origin as we see on Palau, and they will repopulate reefs that have been devastated by heatwaves," she said. "Nature is amazing. Our job with the Super Reefs initiative is to protect these thermally resilient reefs and let nature do the rest."

Rivera added she is in awe of the immense appreciation, respect, and stewardship that the Palauan people have for their environment.

"They have been one of the pioneering countries in promoting marine conservation and ecological protection. It is wonderful to know that these special reefs are in such good hands," Rivera said. "It is my greatest hope that our research will further support the Palauan people in their efforts to maintain a healthy marine ecosystem."

Read more at Science Daily

Hibernating corals and the microbiomes that sustain them

As winter approaches, many species of animals -- from bears and squirrels to parasitic wasps and a few lucky humans -- hunker down for some needed rest. The northern star coral (Astrangia poculata)also enters a hibernating state of dormancy, or quiescence, during this time. But what happens to its microbiome while it's sleeping?

A study led by University of California, Davis, Assistant Professor Anya Brown found that microbial communities shift while this coral enters dormancy, providing it an important seasonal reset. The work may carry implications for coral in warmer waters struggling with climate change and other environmental issues.

"Dormancy, at its most basic, is a response to an environmental stressor -- in this case, cold stress," said Brown, who is part of the UC Davis Bodega Marine Laboratory in the Department of Evolution and Ecology. "If we understand more about this recovery period, it might help us understand what microbes may be responsible for recovering coral in warmer tropical systems."

The study, published in the journal Applied and Environmental Microbiology with scientists from Woods Hole Oceanographic Institution, or WHOI, and Roger Williams University, is the first to demonstrate a persistent microbial community shift with dormancy in a marine animal.

"This study shows that microbes respond to stress and recover in a predictable pattern," said co-author Amy Apprill, an associate scientist at WHOI. "It's foundational knowledge that may help us develop probiotics or other microbial treatments for stressed tropical corals."

While you were sleeping

From October 2020 through March 2021, researchers dove 60 feet down into cold, nearly 40 degrees Fahrenheit water to collect 10 distinct colonies of the coral A. poculata from a dock in Woods Hole, Massachusetts. This coral is found in Atlantic waters extending from the Gulf of Mexico to Massachusetts. As water temperatures cool, the coral retracts its tentacles, stops eating or responding to touch, and goes dormant.

The scientists characterized the microbiomes of the wild coral before, during and after dormancy. They found that while the coral "sleeps," its microbiome sheds nutrient-loving and pathogen-associated microbes, while increasing microbes that may contribute nitrogen while the coral is no longer eating. The scientists found that this restructuring helps the corals maintain their microbial community structure.

"We have long hypothesized that Astrangia's seasonal dormancy allows the coral microbiome to reset and restructure," said co-author Koty Sharp, associate professor at Roger Williams University. "Our research found evidence for a shuffling during that dormant period that may help us identify microbial associates that are key to coral health and recovery from disturbance."

Why does coral wake up?

With this study, a marine species -- the coral A. poculata -- now joins bears, squirrels, crickets and others on the list of animals found to have microbiomes that shift while they are dormant. For example, the ground squirrel's gut microbiome plays an important role in nitrogen recycling while the squirrel fasts during hibernation.

"This work opens a lot of questions," Brown said. "A big one is: Why does the coral 'wake up' in the early spring? This study suggests that key microbial groups may play an important role in triggering the onset of or emergence from this coral's dormancy and the regulation of its microbiome."

Read more at Science Daily

Impact of coral chemical compounds on reef composition and health

Stumbling upon a new source of underwater caffeine was just an added bonus of a new study examining the impact of chemical compounds that corals release into the seawater.

The study found that the organic chemical compounds produced through metabolism -- known as metabolites or exudates -- vary significantly by coral species and that the compounds impact the abundances and compositions of reef microorganisms differently.

This differential release of metabolites from benthic reef organisms is particularly significant in the Caribbean where coral dominance is shifting from hard stony corals to soft octocorals in response to human-caused stressors such as eutrophication, overfishing, and global climate change.

The study "demonstrates the importance of benthic exudates for structuring microbial communities on oligotrophic reefs by focusing on the exudates released from abundant stony corals, octocorals, and an invasive alga," according to the paper led by authors from the Woods Hole Oceanographic Institution (WHOI), "Benthic exometabolites and their ecological significance on threatened Caribbean coral reefs," published in ISME Communications.

"We wanted to know what are the molecules that coral organisms release into the environment, and how do those molecules impact the reef microbes in the seawater surrounding the corals," said lead author Laura Weber, a former postdoc and current information systems associate in WHOI's Marine Chemistry & Geochemistry Department.

"As the species composition of these reefs shifts, it is likely changing the chemicals that are released on the reef that then will have impacts on the microbial community," Weber said. "We need to pay more attention to how changes in reef structure and species composition might influence the microbes that live on the reef, leading to more feedbacks in terms of reef health." She said that understanding microbes on reefs, how they are functioning, and how they might be contributing to the health of corals and of reefs themselves is "pretty much an untapped area to explore."

Here's the caffeine connection.

For the study, researchers collected exudates from six species of Caribbean benthic organisms in a lab setting, using organisms obtained from within the Virgin Islands National Park, including stony corals, octocorals, and an invasive encrusting alga called Ramicrusta textilis. The researchers surprisingly found that R. textilis released caffeine in high quantities.

Their results further "demonstrate that exudates from benthic organisms contribute to the complex pool of extracellular metabolites in reef seawater and that exudate composition varies significantly by species," according to the study

As to why R. textilis produces caffeine, the study notes that caffeine production has not been widely investigated for marine organisms, but that it is a common metabolite produced by land plants generally to deter herbivores and pathogenic microbes. These characteristics "could contribute to the ability of R. textilis to invade and flourish on Caribbean reefs," according to the report. "Given the growing prevalence of Ramicrusta on diverse Caribbean reefs, follow-up research examining the ecological significance of its metabolites on microbes and other reef organisms is needed."

This study "is an important step forward in identifying chemical signals that can help scientists assess reef health," said Elizabeth Kujawinski, co-author of the paper. "Similar to human health diagnostics, the chemical signals within a reef ecosystem are intimately linked to the functions of the symbiotic relationships within reefs." Kujawinski is a senior scientist in WHOI's Marine Chemistry & Geochemistry Department and director of the Center for Chemical Currencies of a Microbial Planet (C-CoMP), a National Science Foundation Science and Technology Center that is based at WHOI.

Co-author Amy Apprill, associate scientist in WHOI's Marine Chemistry & Geochemistry Department, said an important implication of the research is that a diverse benthic community helps to contribute to a more varied metabolite pool and likely supports a more diverse microbial community.

"We are trying to build kind of a library of what microbes and metabolites are present on reefs. My dream is to be able to go out to a reef, take a bucket of reef water, screen it for microbes and metabolites, and be able to tell something about the health of that ecosystem," Apprill said. "This is so important to do because the current methods to monitor reefs are highly visual-based, and it can take months or years to determine if coral is sick or growing. Metabolites and microbes have the potential to be really sensitive sensors for reef health."

This research was conducted with support from the National Oceanic and Atmospheric Administration and the National Science Foundation.

Key Takeaways

Chemical compounds produced through metabolism and then released -- known as metabolites or exudates -- vary significantly by coral species and impact the abundances and compositions of reef microorganisms differently.

The differential release of metabolites from benthic reef organisms is particularly significant in the Caribbean where coral dominance is shifting from hard stony corals to soft octocorals in response to human-caused stressors such as eutrophication, overfishing, and global climate change.

"As the species composition of these reefs shifts, it is likely changing the chemicals that are released on the reef that then will have impacts on the microbial community. We need to pay more attention to how changes in reef structure and species composition might influence the microbes that live on the reef, leading to more feedbacks in terms of reef health."

Stumbling on a new source of underwater caffeine was just an added bonus of a new study examining the impact of chemical compounds that corals release into the seawater.

This study "is an important step forward in identifying chemical signals that can help scientists assess reef health. Similar to human health diagnostics, the chemical signals within a reef ecosystem are intimately linked to the functions of the symbiotic relationships within reefs."

Read more at Science Daily

Corals pass mutations acquired during their lifetimes to offspring

In a discovery that challenges over a century of evolutionary conventional wisdom, corals have been shown to pass somatic mutations -- changes to the DNA sequence that occur in non-reproductive cells -- to their offspring. The finding, by an international team of scientists led by Penn State biologists, demonstrates a potential new route for the generation of genetic diversity, which is the raw material for evolutionary adaptation, and could be vital for allowing endangered corals to adapt to rapidly changing environmental conditions.

"For a trait, such as growth rate, to evolve, the genetic basis of that trait must be passed from generation to generation," said Iliana Baums, professor of biology at Penn State and leader of the research team. "For most animals, a new genetic mutation can only contribute to evolutionary change if it occurs in a germline or reproductive cell, for example in an egg or sperm cell. Mutations that occur in the rest of the body, in the somatic cells, were thought to be evolutionarily irrelevant because they do not get passed on to offspring. However, corals appear to have a way around this barrier that seems to allow them to break this evolutionary rule."

Since the time of Darwin, our understanding of evolution has become ever more detailed. We now know that an organism's traits are heavily determined by the sequence of their DNA. Individuals in a population vary in their DNA sequence, and this genetic variation can lead to the variation in traits, such as body size, that could give an individual a reproductive advantage. Only rarely does a new genetic mutation occur that gives an individual such a reproductive advantage and evolution can only proceed further if -- and this is the key -- the individual can pass the change to its offspring.

"In most animals, reproductive cells are segregated from body cells early in development," said Kate Vasquez Kuntz, a graduate student at Penn State and the co-lead author of the study. "So only genetic mutations that occur in the reproductive cells have the potential to contribute to the evolution of the species. This slow process of waiting for rare mutations in a particular set of cells can be particularly problematic given the rapid nature of climate change. However, for some organisms, like corals, the segregation of reproductive cells from all other cells may occur later in development or may never occur at all, allowing a path for genetic mutations to travel from a parent's body to its offspring. This would increase genetic variation and potentially even serve as a 'pre-screening' system for advantageous mutations."

Corals can reproduce both asexually (through budding and colony fragmentation) and sexually, by producing egg and sperm cells. For the Elkhorn corals studied here, which broadcast their egg and sperm cells into the water in spawning events, eggs from one coral colony are usually fertilized by sperm from a neighboring colony. However, the research team found that some Elkhorn coral eggs developed into viable offspring without a second coral being involved, a kind of single-parent sexual reproduction.

"This single-parent reproduction allowed us to more easily search for potential somatic mutations from the parent coral and track them into the offspring by simplifying the total number of genetic possibilities that could occur in the offspring," said Sheila Kitchen, co-lead author of the study, a postdoctoral researcher at Penn State and the California Institute of Technology co-lead author of the study.

The research team genotyped samples -- using a high-resolution molecular tool called a microarray to investigate DNA differences between the samples -- from ten different locations on a large Elkhorn coral colony that had produced single-parent offspring, and samples from five neighboring colonies at nearly 20,000 genetic locations. The results showed that all six of the separate coral colonies belonged to the same original coral genotype (known as a "genet"), meaning essentially that they were clones derived from a single original colony through asexual reproduction and colony fragmentation. Thus, any genetic variation found in these corals would have been the result of somatic mutation. The team found a total of 268 somatic mutations in the samples, with each coral sample harboring between 2 and 149 somatic mutations.

The team then looked at the single-parent offspring from the parent Elkhorn coral colony and found that 50% of the somatic mutations had been inherited. The exact mechanism of how the somatic mutations make their way into germline cells in the corals is still unknown, but the researchers suspect that the segregation between body and germline cells in corals may be incomplete and some body cells may retain the capacity to form germ cells, allowing somatic mutations to make their way into offspring. They also found evidence for the inheritance of somatic mutations in some offspring from the mating of two separate coral parents but will need additional studies to confirm this.

Read more at Science Daily

Past events reveal how future warming could harm cold-water corals

How will future warming of the planet impact cold-water corals? A new analysis of ancient evidence from the last major global warming event identifies food and oxygen supply as key environmental factors that influence the vitality of cold-water corals in the North Atlantic Ocean and the Mediterranean Sea. Rodrigo da Costa Portilho-Ramos of the University of Bremen, Germany, and colleagues present these findings in the open-access journal PLOS Biology on May 19th.

Much like tropical corals in shallower waters, cold-water corals serve as crucial "engineers" of deep-sea reefs and mounds that are home to rich, unique ecosystems. As climate change progresses, researchers predict, cold-water corals are likely to face harm from such factors as rising ocean temperatures, decreased food supply, lower oxygen levels, and ocean acidification. However, no extinctions of cold-water coral ecosystems have been documented in real-time, so the precise factors that may determine their fate have been unclear.

To shed new light, Portilho-Ramos and colleagues turned to ancient evidence of past climate change as captured in seafloor sediments. They analyzed sediments collected at or near six sites of cold-water coral ecosystems in the North Atlantic Ocean and the Mediterranean Sea, applying standard techniques to reconstruct ocean conditions and the abundance of the common coral species Lophelia pertusa over the last 20,000 years. This period encompasses Earth's last major global warming event.

The analysis revealed that ancient L. pertusa abundance was most strongly influenced by changes in food supply, delivered either vertically from shallower depths or by lateral water flow along the seafloor. Low oxygen concentration also appeared to be a key stressor for L. pertusa. Meanwhile, changes in ocean temperature and salinity did not appear to be significantly associated with proliferation or disappearance of L. pertusa over time.

These findings suggest that climate change-driven alterations to ocean processes that affect food and oxygen supplies may play key roles in the future health of cold-water coral ecosystems. In some cases, the data suggest, high abundance of food may compensate for low oxygen levels.

Read more at Science Daily

Underwater gardens boost coral diversity to stave off ‘biodiversity meltdown’

Corals are the foundation species of tropical reefs worldwide, but stresses ranging from overfishing to pollution to warming oceans are killing corals and degrading the critical ecosystem services they provide. Because corals build structures that make living space for many other species, scientists have known that losses of corals result in losses of other reef species. But the importance of coral species diversity for corals themselves was less understood.

A new study from two researchers at the Georgia Institute of Technology provides both hope and a potentially grim future for damaged coral reefs. In the study, published October 13 in Science Advances, Cody Clements and Mark Hay found that increasing coral richness by 'outplanting' a diverse group of coral species together improves coral growth and survivorship. This finding may be especially important in the early stages of reef recovery following large-scale coral loss -- and in supporting healthy reefs that in turn support fisheries, tourism, and coastal protection from storm surges.

The scientists also call for additional research to better understand and harness the mechanisms producing these positive species interactions, with dual aims to improve reef conservation and promote more rapid and efficient recovery of degraded reefs.

But the ecological pendulum swings the other way, too. If more coral species are lost, the synergistic effects could threaten other species in what Clements and Hay term a "biodiversity meltdown."

"Yes, corals are the foundation species of these ecosystems -- providing habitat and food for numerous other reef species," said Clements, a Teasley Postdoctoral Fellow in the School of Biological Sciences. "Negative effects on corals often have cascading impacts on other species that call coral reefs home. If biodiversity is important for coral performance and resilience, then a 'biodiversity meltdown' could exacerbate the decline of reef ecosystems that we're observing worldwide."

Clements and Hay traveled to Mo'orea, French Polynesia, in the tropical Pacific Ocean, where they planted coral gardens differing in coral species diversity to evaluate the relative importance of mutualistic versus competitive interactions among corals as they grew and interacted through time.

"We've done the manipulations, and the corals should be competing with each other, but in fact they do better together than they do on their own," said Hay, Regents Professor and Teasley Chair in the School of Biological Sciences. Hay is also co-director of the Ocean Science and Engineering graduate program at Georgia Tech. "We are still investigating the mechanisms causing this surprising result, but our experiments consistently demonstrate that the positive interactions are overwhelming negative interactions in the reef settings where we conduct these experiments. That means when you take species out of the system, you're taking out some of those positive interactions, and if you take out critical ones, it may make a big difference."

Under the sea, in a coral-growing garden, in the shade

Coral reefs are under threat worldwide. Hay notes that according to the EPA, the Caribbean has lost 80 to 90 percent of its coral cover. The Indo-Pacific region has lost half of all its corals over the last 30 years. During the bleaching event of 2015-2016 alone, nearly half of the remaining corals along the Great Barrier Reef bleached and died.

"The frequency of these big bleaching and heating events that are killing off corals has increased fairly dramatically over the last 20 to 30 years," he said. "There are hot spots here and there where coral reefs are still good, but they're small and isolated in general."

In their coral gardens in French Polynesia, Hay and Clements manipulated the diversity of the coral species that they planted on platforms resembling underwater chess tables, to try and see if species richness and density affected coral productivity and survival.

Hay noted many previous, similar experiments involved bringing corals into a lab to "pit species against each other." But he points out, "We do all of our experiments in the real world. We're not as interested in whether it can happen, but whether it does happen."

An experimental setup suggested by Clements involving Coke bottles helped the scientists arrange their garden. The end tables "have Coca-Cola bottlecaps embedded in the top of them," Hay said. "We can then cut off the necks of Coke bottles, glue corals into the upside-down necks of these things, and then screw them in and out of these plots. This allows us to not only arrange what species we want where, but every couple of months we can unscrew and weigh them so we can get accurate growth rates."

The researchers found that corals benefitted from increased biodiversity, "but only up to a point," Clements noted. "Corals planted in gardens with an intermediate number of species -- three to six species in most cases -- performed better than gardens with low, or one, species, or high, as in nine, species. However, we still do not fully understand the processes that contributed to these observations."

Read more at Science Daily

Some coral reefs are keeping pace with ocean warming

Some coral communities are becoming more heat tolerant as ocean temperatures rise, offering hope for corals in a changing climate.

After a series of marine heatwaves hit the Phoenix Islands Protected Area (PIPA) in the central Pacific Ocean, a new study finds the impact of heat stress on the coral communities lessened over time.

While a 2002-2003 heatwave devastated coral communities in PIPA, the reefs recovered and experienced minimal losses during a similar event in 2009-2010. Then, in 2015-2016, a massive heatwave put twice as much heat stress on the corals, yet the die-off was much less severe than expected, according to new research published in Geophysical Research Letters, AGU's journal for high-impact reports with immediate implications spanning all Earth and space sciences.

The authors of the new study suspect heat-tolerant offspring from the surviving corals are repopulating the reefs, allowing the community to keep pace with warming seas, at least for the time being.

The new study could help coral reef managers identify coral communities most likely to survive in the warming ocean, improving conservation and restoration outcomes.

"It's easy to lose faith in coral reefs," said first author Michael Fox, a postdoctoral scientist and coral reef ecologist at the Woods Hole Oceanographic Institution (WHOI). "But in PIPA, which is protected from local stressors, and where reefs have enough time to recover between heatwaves, the coral populations are doing better than expected."

UNDERWATER HEATWAVES

Just like on land, heatwaves underwater are becoming more frequent and intense as the world warms, putting stress on ocean ecosystems. High temperatures hit coral reefs especially hard by causing widespread bleaching events, where corals eject the symbiotic algae in their tissues, further weakening the animals. With continued ocean warming, coral reefs face a dim future.

In the new study, researchers monitored coral communities at four islands within PIPA, an area encompassing over 400,000-square-kilometers of coral reef and deep-sea habitat. The Republic of Kiribati established the reserve in 2008, and the United Nations Educational, Scientific and Cultural Organization (UNESCO) designated PIPA as a World Heritage Site in 2010. "The protected area gives us a rare opportunity to study pristine and isolated coral reef ecosystems, a privilege for which we thank the people of Kiribati," said co-author Anne Cohen, a marine scientist at WHOI.

The team used daily satellite data and temperature loggers to examine how each heatwave impacted the corals. They ruled out 11 environmental factors that might explain the higher-than-expected survival following the 2009-2010 and 2015-2016 heatwaves, such as greater cloud cover or more gradual warming.

After the 2002-2003 heatwave, the surveyed sites lost more than three-quarters of their coral cover. The reef was beginning to recover when the 2009-2010 heatwave hit, sparking fears of widespread bleaching, but two years later, coral cover had increased by more than 5%. Following the "Super El Niño" in 2015-2016, which raised ocean temperatures by 3 degrees Celsius (5.4 degrees Fahrenheit), the loss of coral cover was 40% -- about half of the 2002 losses, despite causing twice the level of thermal stress.

A SOURCE OF HOPE FOR CORAL REEFS

Many of the reef-building species survived the heatwaves. "We're seeing areas that were devoid of corals after 2002-2003 that are now flourishing with most of the original species," Fox said.

At other reefs worldwide, sometimes only a handful of especially hardy or fast-growing species recover after a bleaching event. Coral larvae can float long distances on ocean currents, but due to PIPA's isolation, the researchers hypothesize that local heat-tolerant individuals are repopulating the reefs.

Now that the researchers have shown that some coral communities have the potential to keep up with ocean warming, their next step is to figure out how they are doing it.

The findings are "important for giving us hope for the future of coral reefs, and also for helping to maintain support for protecting reefs, including efforts to reduce local threats, like pollution, sedimentation and overfishing that undermine the reefs' ability to adapt," said Lizzie McLeod, the Global Reef Systems Lead at the Nature Conservancy, who was not involved in the study.

She recommends reef conservationists prioritize the conservation of heat-tolerant reefs, because they can act as climate refuges that repopulate other sites decimated by heatwaves.

The study's authors caution that even these remarkable corals have their limits and reversing climate change remains paramount. As heatwaves become more frequent or intense, even heat-tolerant communities could die out.

Read more at Science Daily

Corals carefully organize proteins to form rock-hard skeletons

Charles Darwin, the British naturalist who championed the theory of evolution, noted that corals form far-reaching structures, largely made of limestone, that surround tropical islands. He didn't know how they performed this feat.

Now, Rutgers scientists have shown that coral structures consist of a biomineral containing a highly organized organic mix of proteins that resembles what is in our bones. Their study, published in the Journal of the Royal Society Interface, shows for the first time that several proteins are organized spatially -- a process that's critical to forming a rock-hard coral skeleton.

"Our research revealed an intricate network of skeletal proteins that interact spatially, which likely applies to all stony corals," said Manjula P. Mummadisetti, who led the research while she was a postdoctoral associate in the Rutgers Environmental Biophysics and Molecular Ecology Laboratory led by senior author Paul G. Falkowski. She is now a senior scientist at AVMBioMed in Pottstown, Pennsylvania. "It's important to understand the mechanisms of coral biomineralization and how these invaluable animals persist during the era of anthropogenic climate change."

"Our findings suggest that corals will withstand climate change caused by human activities, based on the precision, robustness and resilience of their impressive process for forming rock-hard skeletons," said Falkowski, a Distinguished Professor in the School of Arts and Sciences and School of Environmental and Biological Sciences at Rutgers University-New Brunswick.

Coral reefs protect shorelines threatened by erosion and storms, and provide fish habitat, nursery and spawning grounds. Indeed, coral reefs provide food for about a half-billion people, who also depend on them to make a living. However, warming ocean waters from climate change put corals at risk from deadly bleaching and disease. More acidic ocean waters, sea-level rise, unsustainable fishing, vessels that damage reefs, invasive species, marine debris and tropical cyclones pose additional threats, according to the National Oceanic and Atmospheric Administration.

Rutgers scientists studied the spatial interactions of the proteins embedded within the skeleton of Stylophora pistillata, a common stony coral in the Indo-Pacific. Stony corals have evolved over more than 400 million years, forming enormous reefs in shallow subtropical and tropical seas. They've been called the "rainforests of the sea."

Predicting the survival of corals based on how they adapted to global climate change over millions of years requires understanding, among other things, how they build reefs by secreting calcium carbonate. That process is called biomineralization.

The scientists showed that several proteins work together to create optimal conditions for biomineralization. These proteins are not located randomly but are well-organized spatially, which the scientists detailed for the first time. The scientists revealed the spatial patterns as new mineral is formed between the living tissue of the animal and its base or an older skeleton.

Read more at Science Daily

Uncovering how some corals resist bleaching

 Coral reefs are beautiful and diverse ecosystems that power the economies of many coastal communities. They're also facing threats that are driving their decline, including the planet's warming waters.

This threat hit extreme levels in 2015, when high temperatures were turning corals white around the globe. Kaneohe Bay in Hawaii was hit hard; nearly half of its corals bleached.

Hidden in the aftermath of this extreme event, however, were biochemical clues as to why some corals bleached while others were resistant, information that could help reefs better weather warming waters in the future. These clues have now been uncovered by researchers at Michigan State University and the University of Hawaii at Manoa.

"It was kind of horrifying," said coral biologist Crawford Drury, who witnessed 2015's bleaching event from Florida before joining UH Manoa's Hawaii Institute for Marine Biology, or HIMB. "It's disheartening to watch, but I try to think of it as an opportunity."

How this disturbing event became an opportunity is now clear thanks to a Feb. 8 report in Nature Ecology & Evolution that showcases HIMB's stewardship and MSU's biochemical expertise.

The researchers discovered chemical signatures in the corals' biology, or biomarkers, that are present in organisms that were most resistant to the bleaching. This previously hidden insight could help researchers and conservationists better restore and protect reefs around the world.

"Usually, we think of biomarkers as signatures of disease, but this could be a signature of health," said MSU's Robert Quinn, an assistant professor in the Department of Biochemistry and Molecular Biology. "This could help us restore reefs with the most resistant stock."

Corals are symbiotic communities where coral animal cells build homes for algae that provide them energy and create their colors. When corals bleach, however, the algae are lost and leave behind skeletons that are susceptible to disease and death.

This symbiosis also plays a role in a coral's resistance and resilience to bleaching, which HIMB was in a unique position to investigate -- literally. The institute sits right next to the reef, enabling experiments in real time.

"The reef is about 100 feet away," Drury said. "I could be there in 30 seconds."

During the 2015 bleaching event, researchers in the Gates Coral Lab at HIMB had tagged individual corals to keep tabs on them. Because most of the corals recovered, the team could follow them over time.

"We think about it as a biological library," said Drury, the principal investigator with the Gates Coral Lab. "It was set up by researchers in our lab who knew it would be very valuable."

Following the bleaching, the team compared and contrasted coral samples in the wild, noting how the organisms responded and recovered, making some surprising observations along the way. For example, neighboring corals could behave completely differently in response to high temperatures. One coral could bleach completely while its neighbor maintained a healthy golden hue.

To understand why, Drury and HIMB postdoctoral researcher Ty Roach, the lead author of the study, sent samples to Quinn at MSU. Here, Quinn and his team could thoroughly analyze the biochemicals of corals collected from this biological library using a method called metabolomics.

"I'm known more for my medical work," said Quinn, who studies the biochemistry of health and disease in humans. "But I've always loved ocean science. My background is in marine microbiology."

If the coral samples are the books in the library, Quinn's lab used sophisticated equipment to reveal the biochemical language within. In particular, his team used tools known as mass spectrometers to understand what set resistant corals apart from susceptible ones.

"The corals are completely different in their chemistry, but you can't tell until you run the mass spec," Quinn said. "These mass specs are some of the most advanced technology on the planet."

Quinn's team found that corals that were resistant to bleaching and those that were susceptible hosted two different communities of algae. The distinguishing feature between these algal populations was found in their cells, in compounds known as lipids.

The researchers' metabolomic analysis detected two different lipid formulations. Bleaching-resistant corals featured algae that have what are known as saturated lipids. Susceptible corals had more unsaturated lipids.

"This is not unlike the difference between oil and margarine, the latter having more saturated fat, making it solid at room temperature," Quinn said.

This discovery poses all sorts of new questions for researchers: How do the corals get these different algae? Is this difference unique to Hawaiian corals or can it be found elsewhere? How can researchers promote the growth and proliferation of resilient corals in a warming world?

"Mass specs are such incredible machines and reveal intricate details of the chemistry involved. The biology is really the hard part." Quinn said. "We're working on new grants. There are so many avenues to explore."

This initial project was funded by the Paul G. Allen Family Foundation.

"This collaboration has been a great opportunity to ask and answer questions," Drury said. "Hopefully, we're just getting started."

In the meantime, having this chemical information is promising for coral conservation. When conservationists reseed corals to help restore reefs, they can potentially select more resilient specimens.

"We can use natural resilience to better understand, support and manage coral reefs under climate change," Drury said.

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Scientists shed new light on viruses' role in coral bleaching

 Scientists at Oregon State University have shown that viral infection is involved in coral bleaching -- the breakdown of the symbiotic relationship between corals and the algae they rely on for energy.

Funded by the National Science Foundation, the research is important because understanding the factors behind coral health is crucial to efforts to save the Earth's embattled reefs -- between 2014 and 2017 alone, more than 75% experienced bleaching-level heat stress, and 30% suffered mortality-level stress.

The planet's largest and most significant structures of biological origin, coral reefs are found in less than 1% of the ocean but are home to nearly one-quarter of all known marine species. Reefs also help regulate the sea's carbon dioxide levels and are a vital hunting ground that scientists use in the search for new medicines.

Since their first appearance 425 million years ago, corals have branched into more than 1,500 species. A complex composition of dinoflagellates -- including the algae symbiont -- fungi, bacteria, archaea and viruses make up the coral microbiome, and shifts in microbiome composition are connected to changes in coral health.

The algae the corals need can be stressed by warming oceans to the point of dysbiosis -- a collapse of the host-symbiont partnership.

To better understand how viruses contribute to making corals healthy or unhealthy, Oregon State Ph.D. candidate Adriana Messyasz and microbiology researcher Rebecca Vega Thurber of the OSU College of Science led a project that compared the viral metagenomes of coral colony pairs during a minor 2016 bleaching event in Mo'orea, French Polynesia.

Also known as environmental genomics, metagenomics refers to studying genetic material recovered directly from environmental samples, in this case samples taken from a coral reef.

For this study, scientists collected bleached and non-bleached pairs of corals to determine if the mixes of viruses on them were similar or different. The bleached and non-bleached corals shared nearly identical environmental conditions.

"After analyzing the viral metagenomes of each pair, we found that bleached corals had a higher abundance of eukaryotic viral sequences, and non-bleached corals had a higher abundance of bacteriophage sequences," Messyasz said. "This gave us the first quantitative evidence of a shift in viral assemblages between coral bleaching states."

Bacteriophage viruses infect and replicate within bacteria. Eukaryotic viruses infect non-bacterial organisms like animals.

In addition to having a greater presence of eukaryotic viruses in general, bleached corals displayed an abundance of what are called giant viruses. Known scientifically as nucleocytoplasmic large DNA viruses, or NCLDV, they are complex, double-stranded DNA viruses that can be parasitic to organisms ranging from the single-celled to large animals, including humans.

"Giant viruses have been implicated in coral bleaching," Messyasz said. "We were able to generate the first draft genome of a giant virus that might be a factor in bleaching."

The researchers used an electron microscope to identify multiple viral particle types, all reminiscent of medium- to large-sized NCLDV, she said.

"Based on what we saw under the microscope and our taxonomic annotations of viral metagenome sequences, we think the draft genome represents a novel, phylogenetically distinct member of the NCLDVs," Messyasz said. "Its closest sequenced relative is a marine flagellate-associated virus."

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Mysterious glowing coral reefs are fighting to recover

A new study by the University of Southampton has revealed why some corals exhibit a dazzling colourful display, instead of turning white, when they suffer 'coral bleaching' -- a condition which can devastate reefs and is caused by ocean warming. The scientists behind the research think this phenomenon is a sign that corals are fighting to survive.

Many coral animals live in a fragile, mutually beneficial relationship, a 'symbiosis' with tiny algae embedded in their cells. The algae gain shelter, carbon dioxide and nutrients, while the corals receive photosynthetic products to fulfil their energy needs. If temperatures rise just 1?C above the usual summer maximum, this symbiosis breaks down; the algae are lost, the coral's white limestone skeleton shines through its transparent tissue and a damaging process known as 'coral bleaching' occurs.

This condition can be fatal to the coral. Once its live tissue is gone, the skeleton is exposed to the eroding forces of the environment. Within a few years, an entire coral reef can break down and much of the biodiversity that depends on its complex structure is lost -- a scenario which currently threatens the future of reefs around the world.

However, some bleaching corals undergo an, until now, mysterious transformation -- emitting a range of different bright neon colours. Why this happens has now been explained by a team of scientists from the University of Southampton's Coral Reef Laboratory, who have published their detailed insights in the journal Current Biology.

The researchers conducted a series of controlled laboratory experiments at the coral aquarium facility of the University of Southampton. They found that during colourful bleaching events, corals produce what is effectively a sunscreen layer of their own, showing itself as a colourful display. Furthermore, it's thought this process encourages the coral symbionts to return.

Professor Jörg Wiedenmann, head of the University of Southampton's Coral Reef Laboratory explains: "Our research shows colourful bleaching involves a self-regulating mechanism, a so-called optical feedback loop, which involves both partners of the symbiosis. In healthy corals, much of the sunlight is taken up by the photosynthetic pigments of the algal symbionts. When corals lose their symbionts, the excess light travels back and forth inside the animal tissue -reflected by the white coral skeleton. This increased internal light level is very stressful for the symbionts and may delay or even prevent their return after conditions return to normal.

"However, if the coral cells can still carry out at least some of their normal functions, despite the environmental stress that caused bleaching, the increased internal light levels will boost the production of colourful, photoprotective pigments. The resulting sunscreen layer will subsequently promote the return of the symbionts. As the recovering algal population starts taking up the light for their photosynthesis again, the light levels inside the coral will drop and the coral cells will lower the production of the colourful pigments to their normal level."

The researchers believe corals which undergo this process are likely to have experienced episodes of mild or brief ocean-warming or disturbances in their nutrient environment -- rather than extreme events.

Dr. Cecilia D'Angelo, Lecturer of Molecular Coral Biology at Southampton, comments: "Bleaching is not always a death sentence for corals, the coral animal can still be alive. If the stress event is mild enough, corals can re-establish the symbiosis with their algal partner. Unfortunately, recent episodes of global bleaching caused by unusually warm water have resulted in high coral mortality, leaving the world's coral reefs struggling for survival."

Dr. Elena Bollati, Researcher at the National University Singapore, who studied this subject during her PhD training at the University of Southampton, adds: "We reconstructed the temperature history of known colourful bleaching events around the globe using satellite imagery. These data are in excellent agreement with the conclusions of our controlled laboratory experiments, suggesting that colourful bleaching occurs in association with brief or mild episodes of heat stress."

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Soft corals near Virgin Islands recover from hurricanes, but stony corals declining

Soft corals at three sites in the U.S. Virgin Islands were able to recover from the destructive effects of nearly back-to-back Category 5 storms in 2017, but the story of these apparently hardy communities of colorful marine life is part of a larger, rapidly shifting narrative surrounding the future of coral reefs, according to a new study led by a University at Buffalo marine ecologist.

The recently realized resilience of the soft corals is an important development toward our increasing understanding of these complex ecosystems, but the findings published in the journal Scientific Reports puts that seemingly good news in the context of an ecosystem that is dramatically changing.

"These soft corals are resilient," says Howard Lasker, a professor in the Department of Environment and Sustainability and the Department of Geology, and an expert on the ecology of coral reef organisms.

"But right now in the Caribbean we're seeing a drastic decline of stony corals, and the soft corals are not a simple replacement for what's being lost."

Soft corals, also known as octocorals, are branching colonial organisms. The colonies with their impressionistic tree-like appearance sway in ocean currents like trees in a storm. The stony corals, which also form colonies, produce rigid skeletons and create the framework of coral reefs. The living animal sits atop the structure they create, slowly secreting calcium carbonate, essentially limestone, to build up the reef.

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The soft corals are doing fine while the stony corals have declined as much as 40% in recent decades, according to Lasker, whose team examined three reefs on the south shore of St. John (part of the U.S. Virgin Islands) following Hurricanes Irma and Maria, storms that passed within two weeks of one another in September 2017. They compared data from the storm's aftermath with sampling that began in 2014 and continued in 2018.

"The octocoral communities we studied suffered dramatic declines with the passage of these hurricanes. In that sense, they weren't resistant to the effects of severe storms," says Lasker. "However they showed resilience -- the ability to recover.

"We found that many colonies were killed, but two years later it hadn't changed the nature of species distribution, and as importantly new colonies were developing making up for the losses" says Lasker.

This pattern of loss and recovery was emblematic historically of stony corals as well, but that's no longer the case for the scleractinians, and Lasker says their soft coral counterparts while providing shelter for many reef animals will not build the hard physical structure of reefs.

"One of the big questions in marine ecology is what we should be doing," says Lasker. "Should we be trying to remediate the damage and attempt to prevent species loss by creating protected environments?"

There is a range of opinions about taking the curator's approach to the reefs, but what certain is that these systems are already dramatically different from descriptions made during the 1950s. And those observations from the '50s stand in obvious contrast to what European explorers would have seen when they encountered the reefs centuries ago.

"Humans are responsible for the changes," says Lasker. "It's really pretty simple: land use, sediments, sewage, agricultural runoff, overfishing, and now climate change."

As the stony corals wane the soft corals are replacing them, but the reason the stony corals aren't recovering comes back to us, according to Lasker.

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