Dec 11, 2021

Newly identified hormone may be a critical driver of type 1 and type 2 diabetes

A newly discovered hormone named fabkin helps regulate metabolism and may play an important role in the development of both type 1 and type 2 diabetes, according to research led by the Sabri Ülker Center for Metabolic Research at Harvard T.H. Chan School of Public Health.

The study showed blood levels of fabkin were abnormally high in mice and human patients with either type 1 or type 2 diabetes. The researchers found that blocking the activity of fabkin prevented the development of both forms of diabetes in the animals. Fabkin likely plays a similar role in humans and the hormone complex could be a promising therapeutic target, according to the researchers.

"For many decades, we have been searching for the signal that communicates the status of energy reserves in adipocytes to generate appropriate endocrine responses, such as the insulin production from pancreatic beta cells," said senior author Gökhan S. Hotamisligil, director of the Sabri Ülker Center. "We now have identified fabkin as a novel hormone that controls this critical function through a very unusual molecular mechanism."

The findings will be published online in Nature on December 8, 2021.

Many hormones are involved in the regulation of metabolism, such as insulin and leptin. Fabkin is different from traditional hormones in that it is not a single molecule with a single defined receptor. Instead, fabkin is composed of a functional protein complex consisting of multiple proteins, including fatty acid binding protein 4 (FABP4), adenosine kinase (ADK) and nucleoside diphosphate kinase (NDPK). Through a series of experiments, the researchers determined that fabkin regulates energy signals outside of cells. These signals then act through a family of receptors to control target cell function. In the case of diabetes, fabkin controls the function of beta cells in the pancreas that are responsible for insulin production.

More than a decade ago, Hotamisligil and colleagues discovered that a protein known as FABP4 is secreted from fat cells during lipolysis, the process in which lipids stored within fat cells are broken down, typically in response to starvation. Numerous studies have since shown correlations between circulating FABP4 and metabolic diseases including obesity, diabetes, cardiovascular disease, and cancer. However, the mechanism of action was unknown.

In the new study, the researchers showed that when FABP4 is secreted from fat cells and enters the blood stream, it binds with the enzymes NDPK and ADK to form the protein complex now identified as fabkin. In this protein complex, FABP4 modifies the activity of NDPK and ADK to regulate levels of molecules known as ATP and ADP, which are the essential units of energy in biology. The researchers discovered that surface receptors on nearby cells sense the changing ratio of ATP to ADP, triggering the cells to respond to the changing energy status. As such, fabkin is able to regulate the function of these target cells.

The authors showed that the insulin-producing beta cells of the pancreas are a target of fabkin and that the hormone is a driving force behind the development of diabetes. When the researchers used an antibody to neutralize fabkin in mice, the animals did not develop diabetes. When the antibody was given to obese, diabetic mice, they reverted to a healthy state.

"The discovery of fabkin required us to take a step back and reconsider our fundamental understanding of how hormones work." said lead author Kacey Prentice, research associate in the Sabri Ülker Center and Department of Molecular Metabolism. "I am extremely excited to find a new hormone, but even more so about seeing the long-term implications of this discovery."

Read more at Science Daily

An easy relationship between a beetle and its yeast symbiont

Japanese lizard beetle larvae feed on yeast injected from their mothers' abdomens into the bamboo stems they are growing in. Now, scientists at Nagoya University have made a surprising discovery: the yeast can digest some complex sugars in the bamboo woody tissue, but it doesn't. Instead, it consumes much simpler and more available sugar sources.

"This was a real surprise," says Nagoya University bioagricultural researcher Wataru Toki. "While yeast can indeed decompose those indigestible components, our analysis shows the yeast actually grows on small molecule monosaccharides." The results are published in the journal Scientific Reports.

Female Japanese lizard beetles carry the yeast Wickerhamomyces anomalus in a specialised pocket-like organ. In spring, they dig holes in bamboo and insert their eggs and the yeast. W. anomalus grows into a sort of fungal garden that the very hungry beetle larvae munch on as soon as they hatch.

In other symbiotic relationships, fungi typically break down complex sugars into more digestible chunks that their host insects can feed on. Toki and his colleague, Dan Aoki, wanted to know whether this was also the case in the relationship between the Japanese lizard beetle and W. anomalus.

Their research suggests not. The scientists used a technique called ion exchange chromatography to analyse and compare the sugar content of fresh bamboo pith, and pith colonized by yeast alone or by yeast and beetle larvae. The comparison revealed that the yeast mostly ate the simple free sugars glucose and fructose.

This surprised the scientists because further tests showed that the yeast can actually digest some complex, indigestible sugars if necessary.

"Bamboo is not only a farm for the yeast but also a house for the larvae. So the larvae can live in a strong house safely because the house is not decomposed by the food," explains Toki.

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Dec 10, 2021

Infant stars identified at the center of our galaxy

What was previously identified as a gas and dust cloud at the centre of our galaxy actually consists of three very young stars. That is the result of a new study led by scientists from the University of Cologne's Institute of Astrophysics. The European Southern Observatory's Very Large Telescope (VLT) - a telescope with mirror diameters of 8.20 metres on the summit of Cerro Paranal in Chile - provided the data for the study, which has appeared in The Astrophysical Journal. The stars began to form less than 1 million years ago, which is very young in astrophysical terms. By comparison, our sun is just under 5 billion years old.

In 2011, an object was found by means of the infrared data measured by the Very Large Telescope, promising to reveal an unprecedented process at the centre of our galaxy. Based on a multi-wavelength analysis, scientists determined that it must be a cloud of gas and dust, which was named G2. The interaction with the black hole at the centre of our galaxy, SgrA*, should have torn G2 apart and caused proverbial fireworks. The researchers assumed that when G2 collided with SgrA*, various processes would cause the gas and dust to make the black hole flare up. But that did not happen.

In addition, there were other factors that gave astronomers around the world a headache and fuelled controversial discussions. Studies showed that the temperature of G2 is almost twice as high as that of surrounding dust sources. One possible explanation for G2's temperature is the extreme number of stars at the centre of our galaxy. So these stars could have heated up G2. The only question is why all other known dust sources at the centre of the galaxy show a much lower temperature. The black hole, SgrA*, was also ruled out as a heat source. The temperature of G2 should have increased the closer the supposed dust cloud came to the black hole - like we would feel if we approached a radiator. However, the temperature remained constant over a long period of time, although the distance to the black hole varied. The more closely G2 was observed around the world, the more it became apparent that the cosmic object had to be more than just a cloud of gas and dust.

The new results show that G2 actually consists of three individual stars. 'We had the opportunity to observe the centre of our galaxy ourselves several times with the Very Large Telescope.

Together with the data from the Southern Observatory archive, we were able to cover a period from 2005 to 2019,' said lead author Dr Florian Peißker from the Institute of Astrophysics. The unusual structure of the data was also helpful in locating G2. Each pixel of the captured image has an associated spectrum that covers a very specific and detailed waveband. For the scientists, this offers an enormous level of detail. 'That G2 actually consists of three evolving young stars is sensational. Never before have stars younger than the ones found been observed around SgrA*,' Peißker said.

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New phenomenon: Forest mammals eavesdrop on messy monkeys

Eavesdropping doesn't just belong in the playbooks of police officers and spies. It is also a phenomenon that plays out among animals. Previous studies have shown that certain species, especially birds, listen to each other for warnings of nearby predators. But a new study from the University of Copenhagen reveals that a variety of mammals eavesdrop on one another when it comes to finding food.

Two biologists from the Natural History Museum of Denmark, Linnea W. Havmøller and Rasmus W. Havmøller, spent nine months in a Panamanian rainforest studying how coatis and agoutis, among other forest mammals, cash in on the messy table manners of monkeys.

"Monkeys are messy eaters. After just a few bites of a fruit, they let it fall to the ground. Other species benefit from this habit. But to do so most effectively, they need to know where and when the monkeys are eating. Here, our study demonstrates that mammals use eavesdropping," says the study's lead author, Linnea W. Havmøller, a Smithsonian Fellow and doctoral student at the University of Copenhagen's Natural History Museum of Denmark.

The eavesdropping consists of the fact that terrestrial fruit-eating mammals -- in this case, coatis and agoutis, listen in when capuchin and spider monkeys eat fruits up in trees. The arboreal monkeys' often- dropped, half-eaten fruit falls and becomes a tasty treasure for the terrestrial creatures below. And these animals are ready to move in as soon as they hear the sound of fruit falling to the ground.

"It is clear that, when terrestrial animals hear monkeys in a tree, they head towards that tree. It's as if their ears are telescoped, which lets them hear the lunch bell from wherever it's ringing. This gives them access to food that would otherwise be inaccessible at the time," explains Rasmus W. Havmøller, a postdoctoral researcher at the Natural History Museum of Denmark.

Crucial access to food

According to the researchers, the eavesdropping strategy is not just a convenient way to get a little extra food for themselves -- it can play a vital role for animals. In Panama, there is a period of time each year when almond trees alone produce the majority of food for a great many species -- including those four studied by the researchers.

"During this season, there is incredibly little to eat in the forest -- other than the prodigious quantities of fruit from this one type of tree. However, terrestrial animals can't access these fruits unless monkeys drop them. For these animals, the eavesdropping method means that they gain access to food in greater quantities and far sooner than the long time it would take if the fruits were left to fall on their own. And during some periods, it is crucial for their food gathering," says Linnea W. Havmøller.

Ramus W. Havmøller continues:

"In the bigger picture, this means that in areas where monkeys have been removed from the local environment -- typically as a result of hunting or destroyed forest -- there can be a large and negative cascade effect. Not only will the species of mammals which depend on the fruit being dropped by monkeys suffer -- there can be an impact on the entire rainforest ecosystem because terrestrial fruit-eating animals help disperse the seeds that allow the forest to reproduce."

While previous observations of the eavesdropping phenomenon have been recorded by pen and paper -- and are at risk of misinterpretation -- the UCPH researchers adopted a variety of technologies. They collected data using GPS collars, camera traps, speakers playing monkey sounds, and traps that collected fallen fruit.

Data from the study show that over 90% of the fruit which landed in the traps had bite marks and was half-eaten by monkeys, and that the fruit that fell outside the traps was eaten almost immediately.

Read more at Science Daily

Are scientists homing in on a cure for Parkinson’s disease?

A molecule that shows promise in preventing Parkinson's disease has been refined by scientists at the University of Bath in the UK, and has the potential to be developed into a drug to treat the deadly neurodegenerative disease.

Professor Jody Mason, who led the research from the Department of Biology and Biochemistry at Bath, said: "A lot of work still needs to happen, but this molecule has the potential to be a pre-cursor to a drug. Today there are only medicines to treat the symptoms of Parkinson's -- we hope to develop a drug that can return people to good health even before symptoms develop."

Parkinson's Disease is characterised by a specific protein in human cells 'misfolding', where it becomes aggregated and malfunctions. The protein -- alpha-synuclein (αS) -- is abundant in all human brains. After misfolding, it accumulates in large masses, known as Lewy bodies. These masses consist of αS aggregates that are toxic to dopamine-producing brain cells, causing them to die. It is this drop in dopamine signalling that triggers the symptoms of Parkinson's Disease, as the signals transmitting from the brain to the body become noisy, leading to the distinctive tremors seen in sufferers.

Previous efforts to target and 'detoxify' αS-induced neurodegeneration have seen scientists analyse a vast library of peptides (short chains of amino acids -- the building blocks of proteins) to find the best candidate for preventing αS misfolding. Of the 209,952 peptides screened in earlier work by scientists at Bath, peptide 4554W showed the most promise, inhibiting αS from aggregating into toxic disease forms in lab experiments in solutions and on live cells.

In their latest work, this same group of scientists tweaked peptide 4554W to optimise its function. The new version of the molecule -- 4654W(N6A) -- contains two modifications to the parental amino-acid sequence and has proven to be significantly more effective at reducing αS misfolding, aggregation and toxicity. However, even if the modified molecule continues to prove successful in lab experiments, a cure for the disease is still many years away.

Dr Richard Meade, the study lead author, said: "Previous attempts to inhibit alpha synuclein aggregation with small molecule drugs has been unfruitful as they are too small to inhibit such large protein interactions. This is why peptides are a good option -- because they are big enough to prevent the protein from aggregating but small enough to be used as a drug. The effectiveness of the 4654W(N6A) peptide on alpha synuclein aggregation and cell survival in cultures is very exciting, as it highlights that we now know where to target on the alpha synuclein protein to supress its toxicity. Not only will this research lead to the development of new treatments to prevent the disease, but it is also uncovering fundamental mechanisms of the disease itself, furthering our understanding of why the protein misfolds in the first place."

Professor Mason added: "Next, we'll be working to how we can take this peptide to clinic. We need to find ways to modify it further so it's more drug-like and can cross biological membranes and get into the cells of the brain. This may mean moving away from naturally occurring amino acids towards molecules that are made in the lab."

This research also has implications for Alzheimer's disease, Type 2 diabetes and other serious human diseases where symptoms are triggered by protein misfolding.

Dr Rosa Sancho, head of research at Alzheimer's Research UK, said: "Finding ways to stop alpha synuclein from becoming toxic and damaging brain cells could highlight a new pathway for future drugs to stop devastating diseases like Parkinson's and dementia with Lewy bodies.

"We're pleased to have supported this important work to develop a molecule that can stop alpha synuclein from misfolding. The molecule has been tested in cells in the laboratory and will need further development and testing before it can be made into a treatment. This process will take a number of years, but it is a promising discovery that could pave the way for a new drug in future.

Read more at Science Daily

Speaking 'baby talk' to infants isn’t just cute: It could help them learn to make words

A new study suggests that when parents baby talk to their infants, they might be helping them learn to produce speech.

The way we instinctively speak to babies -- higher pitch, slower speed, exaggerated pronunciation -- not only appeals to them, but likely helps them learn to understand what we're saying. New research from the University of Florida suggests that baby talk can have another, previously unknown benefit: helping babies learn to produce their own speech. By mimicking the sound of a smaller vocal tract, the researchers think, we're cluing babies in to how the words should sound coming out of their own mouths.

"It seems to stimulate motor production of speech, not just the perception of speech," said Matthew Masapollo, Ph.D., an assistant professor in UF's Department of Speech, Language, and Hearing Sciences and director of the UF Laboratory for the Study of Cognition, Action, and Perception of Speech in the College of Public Health and Health Professions. "It's not just goo-goo ga-ga."

In the study, the researchers changed the frequency sounds to mimic either an infant or adult vocal tract, and then tested how infants reacted. Six- to eight-month-old babies "displayed a robust and distinct preference for speech with resonances specifying a vocal tract that is similar in size and length to their own," they wrote.

Four- to six-month old babies didn't have that preference, suggesting that older babies' dawning ability to control their voices and make words out of babble could be what makes the infant-like sounds more appealing.

Though baby talk may sound simple, it's accomplishing a lot, says coauthor Linda Polka, Ph.D., of McGill University.

"We're trying to engage with the infant to show them something about speech production," she said. "We're priming them to process their own voice."

Read more at Science Daily

Dec 9, 2021

Large future changes in climate variability

There is growing public awareness that climate change will impact society not only through changes in mean temperatures and precipitation over the 21st century, but also in the occurrence of more pronounced extreme events, and more generally in natural variability in the Earth system. Such changes could also have large impacts on vulnerable ecosystems in both terrestrial and marine habitats. A scientific exploration of projected future changes in climate and ecosystem variability is described in a new study published in the journal Earth System Dynamics, representing the result of a broad collaborative partnership between the IBS Center for Climate Physics (ICCP) at Pusan National University in South Korea and the Community Earth System Model (CESM) project at the National Center for Atmospheric Research (NCAR) in the US.

The team conducted a set of 100 global Earth system model simulations over 1850-2100, working with a "business-as-usual" scenario for relatively strong emissions of greenhouse gases over the 21st century. The runs were given different initial conditions, and by virtue of the butterfly effect they were able to represent a broad envelope of possible climate states over 1850-2100, enabling sophisticated analyses of changes in the variability of the Earth system over time. The nominally one-degree (~100km) resolution of the model, in conjunction with the 100-member set of runs, represented an unprecedented set of technical challenges that needed to be met before advancing to the goal of assessing how climate variability is impacted by sustained anthropogenic changes to the climate system. "We met these challenges by using the IBS/ICCP supercomputer Aleph, one of Korea's fastest supercomputers" says Dr. Sun-Seon Lee from the ICCP, a co-author of the study who ran the simulations together with her NCAR colleague Dr. Nan Rosenbloom. For the project, approximately 80 million hours of supercomputer time were used, and approximately 5 Petabytes of disc space (approximately 5000 normal hard discs) were required for storage of the model output.

The main finding of the study is that the impact of climate change is apparent in nearly all aspects of climate variability, ranging from temperature and precipitation extremes over land to increased number of fires in California, to changes in bloom amplitude for phytoplankton in the North Atlantic Ocean. Each of these changes has important impacts for sustainable resource management. As an example, occurrences of extreme precipitation events over the 21st century (between 2000-2009 and 2090-2099) indicate that extremes are expected to become more commonplace over many regions. These projected changes in precipitation extremes are in fact representative of the omnipresence of changes in extremes in the future across a broad range of climate and ecosystem variables, which has important implications for future adaptation strategies.

"In addition to large-scale changes in extreme events, our study also identified large-scale changes in the structure of the seasonal cycle over the 21st century, showing an enhanced growing season length over the continental regions north of 50°N," says Dr. Keith Rodgers from the ICCP, first author of the study and a co-lead of the CESM2 Large Ensemble Project. Largely due to mean state warming and ensuing changes in the timing of the retreat and advance of winter snow cover, by the end of the 21st century growing season length is projected to increase by three weeks.

Taken together, the computer simulations reveal that across our planet we can expect widespread changes in climate variability, ranging in timescales from synoptic storms to seasons to that of El Niño to decades. Dr. Gokhan Danabasoglu, a co-author of the study and a co-lead of the project, says "an important step moving forward will be to identify more fully the potential societal impacts and to communicate the implications for adaptation strategies." This broader study has already motivated a number of more specialized scientific investigations using the tremendous volume of output from the simulations, spanning topics from marine ecosystem impacts to hydrological changes that affect water supply.

Read more at Science Daily

A young, sun-like star may hold warnings for life on Earth

Astronomers spying on a stellar system located dozens of lightyears from Earth have, for the first time, observed a troubling fireworks show: A star, named EK Draconis, ejected a massive burst of energy and charged particles much more powerful than anything scientists have seen in our own solar system.

The researchers, including astrophysicist Yuta Notsu of the University of Colorado Boulder, will publish their results Dec. 9 in the journal Nature Astronomy.

The study explores a stellar phenomenon called a "coronal mass ejection," sometimes known as a solar storm. Notsu explained that the sun shoots out these sorts of eruptions on a regular basis -- they're made up of clouds of extremely-hot particles, or plasma, that can hurtle through space at speeds of millions of miles per hour. And they're potentially bad news: If a coronal mass ejection hit Earth dead on, it could fry satellites in orbit and shut down the power grids serving entire cities.

"Coronal mass ejections can have a serious impact on Earth and human society," said Notsu, a research associate at the Laboratory for Atmospheric and Space Physics (LASP) at CU Boulder and the U.S. National Solar Observatory.

The new study, led by Kosuke Namekata of the National Astronomical Observatory of Japan and formerly a visiting scholar at CU Boulder, also suggests that they can get a lot worse.

In that research, Namekata, Nostu and their colleagues used telescopes on the ground and in space to peer at EK Draconis, which looks like a young version of the sun. In April 2020, the team observed EK Draconis ejecting a cloud of scorching-hot plasma with a mass in the quadrillions of kilograms -- more than 10 times bigger than the most powerful coronal mass ejection ever recorded from a sun-like star.

The event may serve as a warning of just how dangerous the weather in space can be.

"This kind of big mass ejection could, theoretically, also occur on our sun," Notsu said. "This observation may help us to better understand how similar events may have affected Earth and even Mars over billions of years."

Superflares erupt

Notsu explained that coronal mass ejections often come right after a star lets loose a flare, or a sudden and bright burst of radiation that can extend far out into space.

Recent research, however, has suggested that on the sun, this sequence of events may be relatively sedate, at least so far as scientists have observed. In 2019, for example, Notsu and his colleagues published a study that showed that young sun-like stars around the galaxy seem to experience frequent superflares -- like our own solar flares but tens or even hundreds of times more powerful.

Such a superflare could, theoretically, also happen on Earth's sun but not very often, maybe once every several thousand years. Still, it got Notsu's team curious: Could a superflare also lead to an equally super coronal mass ejection?

"Superflares are much bigger than the flares that we see from the sun," Notsu said. "So we suspect that they would also produce much bigger mass ejections. But until recently, that was just conjecture."

Danger from above

To find out, the researchers set their sights on EK Draconis. The curious star, Notsu explained, is about the same size as our sun, but, at just 100 million years old, it's a relative youngster in a cosmic sense.

"It's what our sun looked like 4.5 billion years ago," Notsu said.

The researchers observed the star for 32 nights in winter and spring 2020 using NASA's Transiting Exoplanet Survey Satellite (TESS) and Kyoto University's SEIMEI Telescope. On April 5, Notsu and his colleagues got lucky: The researchers looked on as EK Draconis erupted into a superflare, a really big one. About 30 minutes later, the team observed what appeared to be a coronal mass ejection flying away from the star's surface. The researchers were only able to catch the first step in that ejection's life, called the "filament eruption" phase. But even so, it was a monster, moving at a top speed of roughly 1 million miles per hour.

It may also not bode well for life on Earth: The team's findings hint that the sun could also be capable of such violent extremes. But don't hold your breath -- like superflares, super coronal mass ejections are probably rare around our getting-on-in-years sun.

Still, Notsu noted that huge mass ejections may have been much more common in the early years of the solar system. Gigantic coronal mass ejections, in other words, could have helped to shape planets like Earth and Mars into what they look like today.

"The atmosphere of present-day Mars is very thin compared to Earth's," Notsu said. "In the past, we think that Mars had a much thicker atmosphere. Coronal mass ejections may help us to understand what happened to the planet over billions of years."

Read more at Science Daily

Ethiopian monuments 1,000 years older than previously thought

Rising as high as 20 feet, ancient stone monoliths in southern Ethiopia are 1,000 years older than scientists previously thought, according to a new study in the Journal of African Archaeology.

A Washington State University research team used advanced radiocarbon dating to determine the often phallic-shaped monoliths, or stelae, at the Sakaro Sodo archeological site in Ethiopia's Gedeo zone were likely created sometime during the first century A.D.

The only other attempt to determine the age of the more than 10,000 stele monoliths located at various sites in the Gedeo zone was conducted by French scientists in the 1990s. It provided a far more modest construction date of around 1100 A.D. for the monuments of Tuto Fela in the northern part of Gedeo.

Under consideration as a UNESCO World Heritage Site, Sakaro Sodo and other archeological sites in the Gedeo zone have the largest number and highest concentration of megalithic stele monuments in Africa. The standing stones range widely in size, function, and arrangement in the landscape.

While many of the monoliths have fallen and/or are undecorated, a few have intricately wrought faces and other anthropomorphic designs carved into the stone that can be seen today.

Despite the impressive nature of the archeological site, little is known about why or how the monoliths were built.

"This is one of the most understudied archaeological sites in the world, and we wanted to change that," said Ashenafi Zena, lead author of the study and a former WSU doctoral researcher now at the State Historical Society of North Dakota.

Zena, an Ethiopian native, originally decided to conduct a study of the stones after traveling to the region with his doctoral advisor Andrew Duff, a WSU professor of anthropology, in 2013.

"It was shocking to see such a large number of monuments in such a small area," Zena said. "Looking at the stones, many of which had fallen to the ground and some have broken into pieces, I decided to focus my dissertation work there instead of investigating cave sites in southern Ethiopia."

In addition to pushing back the date of the earliest monoliths' construction by a millennium, the researchers also determined where the ancient builders of the site likely quarried raw stone for the project. They also identified, for the first time, the earliest known sources of obsidian artifacts that were recovered from the Gedeo stele sites.

Surprisingly, most of the obsidian the researchers identified at Sakaro Sodo originated some 300 km away in northern Kenya, illustrating that the people at Sakaro Sodo obtained most of their obsidian raw materials through some form of exchange or trade.

While little is known about the pastoral and/or agricultural people who populated the Sakaro Sodo region of southern Ethiopia at the turn of the first millennium, the new construction dates of the stele monuments identified by Zena and Duff appear to coincide with the arrival of domesticated animals in the region and the beginnings of more complex social and economic systems.

"One of the reasons why this research is important is because it has the potential to shed new light on what the earliest people in this area were doing for a living as well as what their cultural and social practices were," Duff said.

Existing archaeological, ethnographic, and living megalithic stele traditions in the region suggest that the oldest stele sites in Ethiopia at Sakaro Sodo and other nearby locations were likely created for two purposes: to commemorate the transfer of power from one generation to the next or to record and commemorate group achievement.

"The diversity of function of the stele in Ethiopia is really fascinating," Duff said. "For example, we know that the more recently constructed stele monuments of Tuto Fela in the north part of Gedeo were used as burial markers. While the linear placement pattern of the earliest stones at Sakaro Sodo makes us think they may have been markers to signify the passing of generational leadership."

While the political situation and the recent escalation of the COVID-19 pandemic in Ethiopia make following up on the investigation in the near term difficult, the researchers have several future projects in the works that they hope to continue as soon as possible.

One project involves more additional archeological investigations at other stele sites in the areas with colleagues at Addis Ababa University in Ethiopia. The other is a project led by Duff and current WSU doctoral student Addisalem Melesse who are working with the Ethiopian Department of Archeology and Heritage Management to determine how the stele sites can be better managed to both preserve the heritage of the region and generate tourism.

Read more at Science Daily

Preterm birth risk strongly linked to pre-eclampsia

Women who gave birth to a premature baby after developing pre-eclampsia were 17 times more likely to experience another preterm birth if pre-eclampsia emerged again, new Curtin University research has found.

The study, published in the British Journal of Obstetrics and Gynaecology, examined more than 125,000 women who experienced two consecutive singleton births in Western Australia from 1998 to 2015.

About 27,000 babies are born prematurely -- or before 37 weeks' gestation -- across Australia each year, with preterm birth the leading cause of death and morbidity in children up to five years of age in the developed world.

Lead author and PhD candidate Jennifer Dunne, from Curtin's School of Population Health, said the findings showed the strongest link between preterm birth and pregnancies complicated by pre-eclampsia, a serious pregnancy condition that is usually characterised by high blood pressure, protein in the urine and severe swelling.

"When both pregnancies were complicated by pre-eclampsia, the risk of a subsequent preterm birth increased 10-fold after an initial term birth and 17-fold when the first birth was preterm, compared to women who had an uncomplicated first pregnancy," Ms Dunne said.

"This study also found that there was a three-fold higher risk of women experiencing a subsequent case of pre-eclampsia after a preterm birth in the first pregnancy that was not complicated by pre-eclampsia.

"Until recently, a first birth at full term was considered a reduced risk for a preterm delivery in the next pregnancy. However, there is emerging evidence that a complicated first pregnancy, regardless of whether the baby was delivered early or at full term, increases the subsequent risk of a baby being born prematurely."

Ms Dunne said the main pregnancy complications examined included pre-eclampsia, placental abruption (the detachment from the wall of the womb), small-for-gestational age and perinatal death (a stillbirth or a neonatal death in the first 28 days).

"Having any of the four complications in their first pregnancy puts women at an increased risk of a preterm birth in their next pregnancy, regardless of whether that first birth ended at full term or preterm," Ms Dunne said.

"Likewise, women whose first pregnancy ended in a preterm delivery were at an increased risk for each pregnancy complication in the second pregnancy.

Read more at Science Daily

A new understanding of mental illness

The causes of psychiatric disorders are poorly understood. Now, in work led by researchers at McGill University, there is evidence that a wide range of early onset psychiatric problems (from depression, anxiety and addictions to dyslexia, bulimia, and ADHD) may be largely due to the combination of just three factors. The first is biological -- in the form of individual variability in the brain's dopamine reward pathway. The second is social -- and points to the important role of early childhood neglect or abuse. And the third is psychological -- and relates to temperament, and particularly to tendencies toward impulsivity and difficulty controlling emotions. These findings have implications for understanding both the causes of a wide range of psychiatric disorders and the features worth targeting in early intervention efforts.

"Until recently, it was thought that psychiatric disorders reflected discrete disease entities, each with their own unique causes," says Marco Leyton, the senior author on a recent study published in Neuropsychopharmacologyand a professor in McGill's Department of Psychiatry and Senior Scientist at the Research Institute of the McGill University Health Centre. "The present research upends this idea, suggesting instead that most early onset disorders largely reflect differential expressions of a small number of biological, psychological and social factors."

First study to combine three key factors: temperament, trauma and dopamine

Earlier research has suggested that each of the three factors, in isolation, has at least modest effects on the development of psychiatric disorders. In comparison, the authors of this new study had the first ever opportunity to examine all three factors together. Fifty-two young people, living in the Montreal or Quebec City areas (30 women and 22 men), who have been followed since birth by Jean Séguin (Université de Montréal) and Michel Boivin (Université Laval), had brain imaging scans (PET and MRI) that measured features of their dopamine reward pathway. These brain features were then combined with information about their temperamental traits and histories of early life adversity.

High accuracy & potential predictive value of approach

Strikingly, this combination of just three factors predicted, with over 90% accuracy, which participants had mental health problems either in the past or during the study's three-year follow-up period. Indeed, since the results are so novel and potentially so important, CIHR has provided an additional two million dollars to double the sample size and follow the participants through to their mid-20s. "And the results do need to be replicated, both in larger and ethnically more diverse groups," emphasizes the paper's first author, Maisha Iqbal, a graduate student in McGill's Integrated Program in Neuroscience. "If replicated, our research could transform the way we think about mental illnesses."

Read more at Science Daily

Dec 8, 2021

Iron integral to the development of life on Earth – and the possibility of life on other planets

Iron is an essential nutrient that almost all life requires to grow and thrive. Iron's importance goes all the way back to the formation of the planet Earth, where the amount of iron in the Earth's rocky mantle was 'set' by the conditions under which the planet formed and went on to have major ramifications for how life developed. Now, scientists at the University of Oxford have uncovered the likely mechanisms by which iron influenced the development of complex life forms, which can also be used to understand how likely (or unlikely) advanced life forms might be on other planets. The work was published today in PNAS.

'The initial amount of iron in Earth's rocks is 'set' by the conditions of planetary accretion, during which the Earth's metallic core segregated from its rocky mantle,' says co-author Jon Wade, Associate Professor of Planetary Materials at the Department of Earth Sciences, University of Oxford. 'Too little iron in the rocky portion of the planet, like the planet Mercury, and life is unlikely. Too much, like Mars, and water may be difficult to keep on the surface for times relevant to the evolution of complex life.'

Initially, iron conditions on Earth would have been optimal to ensure surface retention of water. Iron would have also been soluble in sea water, making it easily available to give simple life forms a jumpstart in development. However, oxygen levels on Earth began to rise approximately 2.4 billion years ago (referred to as the 'Great Oxygenation Event'). An increase in oxygen created a reaction with iron, which led to it becoming insoluble. Gigatons of iron dropped out of sea water, where it was much less available to developing life forms.

'Life had to find new ways to obtain the iron it needs,' says co-author Hal Drakesmith, Professor of Iron Biology at the MRC Weatherall Institute of Molecular Medicine, University of Oxford. 'For example, infection, symbiosis and multicellularity are behaviours that enable life to more efficiently capture and utilise this scarce but vital nutrient. Adopting such characteristics would have propelled early life forms to become ever more complex, on the way to evolving into what we see around us today.'

The need for iron as a driver for evolution, and consequent development of a complex organism capable of acquiring poorly available iron, may be rare or random occurrences. This has implications for how likely complex life forms might be on other planets.

'It is not known how common intelligent life is in the Universe' says Prof Drakesmith. 'Our concepts imply that the conditions to support the initiation of simple life-forms are not enough to also ensure subsequent evolution of complex life-forms. Further selection by severe environmental changes may be needed -- for example, how life on Earth needed to find a new way to access iron. Such temporal changes at planetary scale may be rare, or random, meaning that the likelihood of intelligent life may also be low.'

Read more at Science Daily

Fleshing out the bones of Quetzalcoatlus, Earth's largest flier ever

Look around any wetland today and you're likely to see 3-foot-tall egrets or 4-foot-tall herons wading in the shallows in stealthy search of fish, insects or crustaceans.

But 70 million years ago, along the Rio Grande River in Texas, a more impressive and scarier creature stalked the marshes: the 12-foot-tall pterosaur known as Quetzalcoatlus. With a 37- to 40-foot wingspan, it was the largest flying animal that ever lived on Earth.

In six papers published this week as a Memoir by the Society of Vertebrate Paleontology, scientists and an artist provide the most complete picture yet of this dinosaur relative, the largest example of which is represented by just a single set of fossilized bones collected in the late 1970s from Big Bend National Park. The papers describe the pterosaur's geological and ecological setting during the Upper Cretaceous, its anatomy and taxonomic position, and how it moved on the ground and in the air.

One of the papers, co-authored by University of California, Berkeley, paleontologist Kevin Padian, emeritus professor of integrative biology and emeritus curator in the UC Museum of Paleontology, answers some of the mysteries surrounding the flying and walking behavior of this unique animal, about which little has been published since its discovery more than 45 years ago. How can an animal walk with wings so long that they touch the ground when folded? What did it eat, and how did it feed? How strong a flier was it? And how does an animal whose wings span 40 feet, yet whose legs are only 6 feet high at the hip, launch itself into the air?

"This ancient flying reptile is legendary, although most of the public conception of the animal is artistic, not scientific," said Padian, who co-edited the monograph. "This is the first real look at the entirety of the largest animal ever to fly, as far as we know. The results are revolutionary for the study of pterosaurs -- the first animals, after insects, ever to evolve powered flight."

The original Quetzalcoatlus fossils were discovered by Douglas Lawson, who at the time was a 22-year-old studying for a master's degree in geology at the University of Texas, Austin, and later became a doctoral student at UC Berkeley. The fossil pterosaur -- which he named after the Aztec flying serpent god -- consisted of a partial wing that implied a size comparable to that of some airplanes and was at least 50% bigger than the wings of the largest known bird, an extinct and much larger relative of living condors and a descendent of the dinosaurs.

Unlike the serpent god, Quetzalcoatlus had no feathers: Its body, including wings of skin and fibers of keratin, was covered with hair, as in all pterosaurs. Like dinosaurs, it was likely warm- blooded and active. It had lost its tail, presumably to improve its maneuverability, and its 6-foot neck and 4-foot crested skull suggest a stork on steroids.

Wann Langston, for many years a curator of UT Austin's Vertebrate Paleontology Laboratory, invited many colleagues, including Padian, to work on the fossils, but was unable to publish a full description of the animal before his death in 2013.

At the request of the laboratory, Padian teamed up with engineer and amateur paleontologist James Cunningham and London artist John Conway -- all longtime colleagues of Langston -- to look at the fossilized bones of Lawson's find, Quetzalcoatlus northropi, and compare them with more numerous specimens of a smaller Quetzalcoatlus species in order to better understand feeding, flying, walking and launch behavior. Langston is listed as a fourth co-author of the paper.

"Jim and John and I came to the project with very different ideas," Padian said, "but we didn't put a single statement in our paper unless all three of us agreed on it."

Playing with the bones


To understand how the Quetzalcoatlus pterosaurs behaved, Padian and colleagues manipulated casts of bones from about a dozen smaller and more complete pterosaur fossil skeletons, including those of the species Quetzalcoatlus lawsoni, which is newly-named after Lawson in one of the accompanying papers. The Q. lawsoni fossils were found in the same Javelina Formation in West Texas around the time the larger Q. northropi was excavated. The smaller specimens are half the size of the larger one Lawson initially found, but they consist of about 300 fossilized bone bits. The larger animal, however, is known only from a few wing bones: a humerus and an ulna from the upper arm and forearm, respectively.

The picture that Padian, Cunningham and Conway paint is of an animal similar to egrets and herons in how it feeds and launches itself into the air, like condors and vultures in how it soars, but, because of its enormous wings, unlike any other known animal in how it walks.

"Pterosaurs have huge breastbones, which is where the flight muscles attach, so there is no doubt that they were terrific fliers," he said. "Their upper arm bone -- the humerus -- has huge, bony crests for anchoring the flight muscles, which are larger than those of birds and far larger than those of bats. The wings worked essentially like those of birds and other dinosaurs, to which pterosaurs are most closely related. Despite two centuries of reconstructing pterosaurs like bats, there is no evidence for this view: Bats are unique and very different from birds and pterosaurs."

Like birds and bats and even humans, the forelimbs of pterosaurs have three segments: the upper arm or humerus, from the shoulder socket to the elbow; the forearm, including the radius and ulna; and the wrist and hand bones. But unlike birds and bats, the leading edge of the outer part of the pterosaur wing is formed by a giant wing-finger.

"It's like having a ski pole extended from the base of your fingers and angled 90 degrees outward," Padian said.

Quetzalcoatlus was bipedal, that is, it walked on two legs. But because its forelimb bones are so elongated, its wings could not avoid touching the ground when folded. This four-point stance suggested to some that the pterosaurs walked like a vampire bat, which uses its forelimbs to propel itself forward on the ground. But study of the bones shows that the pterosaur could not have used the wings for propulsion. When grounded, they could only move their wings forward or to the side.

"Once you put the forelimbs on the ground in these pterodactyls, you can't rotate the forelimb back to push the animal forward like any sensible quadruped because there's a bone in the way in the shoulder," Padian said.

That doesn't mean they were clumsy.

"To avoid tripping, the animal first raised its left arm, then advanced its left leg in a full step, then it placed the hand on the ground," he said. "The process was repeated with the right limb: The right arm lifted, the right leg advanced and emplaced the right foot, and then the right hand descended. It seems a cumbersome process to us, but the animal could execute the gait quickly and easily."

This fits perfectly with trackways of walking pterosaurs discovered in Southern France in the 1990s, Padian said.

Powerful legs provide a jump-start

However, because its legs were shorter than its wings, taking off was not as simple as flapping to generate lift.

"There are problems with a running takeoff. In the smaller specimens, you're looking at a 9-foot wing that's probably flexed to a bit under 8 feet on each side. The hip is maybe 3 to 4 feet above the ground. So, if you're running along, you can only depress the wings about 40 degrees below the horizontal before they hit the ground. Ideally, you'd like to get a deeper stroke, and because these wings are so large, you can't move them very quickly, so a faster stroke won't work. Running helps you with takeoff speed, but that isn't the problem."

Instead, pterosaurs likely used their strong rear legs to jump upward, and then, once the ground clearance equaled the wing length, began to flap. Herons and egrets do the same, though they are considerably smaller than Quetzalcoatlus.

"If they could jump twice their hip height, to 8 feet, the wings would be able to clear the ground, and they could execute a deeper flight stroke," Padian said. "This may be the best option for taking off, though it depends on sufficient power from the legs."

He said that the forelimbs might have helped push the creature off the ground in the manner of vampire bats, but this would have required extraordinary strength of the extensor muscles of the forearm, which seems unlikely.

Given its habitat -- inland marshes and open fields, much different from the West Texas desert today -- the pterosaur's most likely feeding strategy would resemble that of today's egrets and herons, which are waders and stalkers with a varied diet. They sift the mud for crabs, worms and clams, but also snatch up small fish, insects, snakes and lizards.

"Some people said it was a carrion feeder, some people said it flew over the water and plucked fish like a pelican. Those things don't work," he said. "The jaws are very long and thin, tapering to a point. Wann used to call them chopsticks. And if you look at a heron or egret's jaws, they're the same -- good for plucking lizards and other small game, but definitely not carcass-scavenging. It had no teeth."

Quetzalcoatlus could have been as skilled at stalking prey from the air as from land.

"This animal could raise its head and neck vertically, so as to swallow the small prey it seized with its jaws. It could lower the great head far below the horizontal, so if it were cruising above dry land, it might have been able to swoop down and pluck an unsuspecting animal," Padian said. "Walking about on land, it could move its head and neck to an arc of 180 degrees, capable of full vision all around it."

Nearly 40 years ago, Padian teamed up with paleontologist Jean-Michel Mazin, who had discovered the pterosaur trackways in France, to describe the landing techniques of pterosaurs.

"The animal had to flap its wings to stall and slow its descent. And then it lands with its back feet and takes a little hop," Padian said. "And then it puts down its front feet, then it assumes a four-legged posture, straightens itself out and walks away."

The team's detailed reconstruction of the anatomy and behavior of Quetzalcoatlus was possible thanks to the excellent condition of the fossils, which were preserved in nearly their original three-dimensional shape, he said. This is rare for fossil animals and especially for pterosaurs, which have extremely thin bones that are usually crushed.

Padian admits that questions about Quetzalcoatlus and pterosaurs, in general, still remain, such as the shape of the wing membranes and where they were attached to the body. He pointed out that the legs were organized like those of birds and other dinosaurs, with the knees pointed forward, and that they put one foot in front of the other when walking. They could not have angled the legs sideways, however, like bats, which have unique hip joints that permit this.

Because of this, pterosaur legs would have been useless for extending the wings, which suggests that the wings were attached to the body only. Pterosaurs likely resembled birds in flight, with their legs tucked underneath.

All of the details will be online for the world to read and critique, thanks to Nathan Myhrvold, former chief technology officer of Microsoft Corp., who funded the various teams to prepare the monographs and paid for open access. The monograph was coedited by Matthew Brown, director of UT Austin's Vertebrate Paleontology Collections at the Jackson School of Geosciences.

Read more at Science Daily

Ancient DNA found in soil samples reveals mammoths, Yukon wild horses survived thousands of years longer than believed

Mere spoonfuls of soil pulled from Canada's permafrost are opening vast windows into ancient life in the Yukon, revealing rich new information and rewriting previous beliefs about the extinction dynamics, dates and survival of megafauna like mammoths, horses and other long-lost life forms.

In a new paper, published in the journal Nature Communications, researchers from McMaster University, the University of Alberta, the American Museum of Natural History and the Yukon government present a 30,000-year DNA record of past environments, drawn from cored permafrost sediments extracted from the Klondike region of central Yukon.

Researchers used DNA capture-enrichment technology developed at McMaster to isolate and rebuild, in remarkable detail, the fluctuating animal and plant communities at different time points during the Pleistocene-Holocene transition, an unstable climatic period 11,000-14,000 years ago when a number of large species such as mammoths, mastodons and sabre-toothed cats disappeared.

They reconstructed the ancient ecosystems using tiny soil samples which contain billions of microscopic genomic sequences from animal and plant species.

The analysis reveals that mammoths and horses were already in steep decline prior to the climatic instability, but they did not immediately disappear due to human overhunting as previously thought. In fact, the DNA evidence shows that both the woolly mammoth and North American horse persisted until as recently as 5,000 years ago, bringing them into the mid-Holocene, the interval beginning roughly 11,000 years ago that we live in today.

Through the early Holocene the Yukon environment continued to experience massive change. Formerly rich grasslands -- the "Mammoth Steppe" -- were overrun with shrubs and mosses, species no longer held in check by large grazing herds of mammoths, horses and bison. Today, grasslands do not prosper in northern North America, in part because there are no megafaunal "ecological engineers" to manage them.

"The rich data provides a unique window into the population dynamics of megafuana and nuances the discussion around their extinction through more subtle reconstructions of past ecosystems" says evolutionary geneticist Hendrik Poinar, a lead author on the paper and director of the McMaster Ancient DNA Centre.

This work builds on previous research by McMaster scientists who had determined woolly mammoths and the North American horse were likely present in the Yukon approximately 9,700 years ago. Better techniques and further investigation have since refined the earlier analysis and pushed forward the date even closer to contemporary time.

"Now that we have these technologies, we realize how much life-history information is stored in permafrost,"explains Tyler Murchie, a postdoctoral researcher in McMaster's Department of Anthropology and a lead author of the study.

"The amount of genetic data in permafrost is quite enormous and really allows for a scale of ecosystem and evolutionary reconstruction that is unparalleled with other methods to date" he says.

"Although mammoths are gone forever, horses are not" says Ross MacPhee of the American Museum of Natural History, another co-author. "The horse that lived in the Yukon 5,000 years ago is directly related to the horse species we have today, Equus caballus. Biologically, this makes the horse a native North American mammal, and it should be treated as such."

Read more at Science Daily

Trends in binge drinking among older men and women in the United States

Binge drinking has increased in recent years among older U.S. men but not among older women, according to a study published in the Journal of the American Geriatrics Society.

The study included 18,794 adults aged 65 years and older who participated in the 2015-2019 National Survey on Drug Use and Health. Binge drinking was defined as consuming 5 or more drinks on the same occasion for men and 4 or more drinks for women.

Binge drinking among older men increased from 12.8% in 2015 to 15.7% in 2019 but remained stable among older women (7.6% to 7.3%). Having a college degree was associated with a higher risk of binge drinking among women but a lower risk among men. Men who were separated or divorced were also at higher risk, but women were not. Both men and women who reported use of tobacco or cannabis in the past month were at higher risks of binge drinking.

"Our study brings the most up-to-date findings on trends in binge drinking in older age, especially the unnoticed importance of understanding the unique demographic characteristics of binge drinking that differ in men and women given gender norms and expectations of societies that are consistently evolving. For example, we noted an increased frequency in education among binge drinking older women. Women with more education may have more opportunities to drink and may be less constricted by gender norms against women consuming alcohol," said lead author Tala Al-Rousan, MD, MPH, of the University of California, San Diego. "Moreover, our findings would encourage health providers who care for older men and women with chronic conditions who are at risk of binge drinking to offer tailored messages that are targeted at certain chronic conditions."

From Science Daily

Natural infection and vaccination together provide maximum protection against COVID variants

A combination of vaccination and naturally acquired infection appears to boost the production of maximally potent antibodies against the COVID-19 virus, new UCLA research finds.

The findings, published in the peer-reviewed journal mBio, raise the possibility that vaccine boosters may be equally effective in improving antibodies' ability to target multiple variants of the virus, including the delta variant, which is now the predominant strain, and the recently detected omicron variant. (The study was conducted prior to the emergence of delta and omicron, but Dr. Otto Yang, the study's senior author, said the results could potentially apply to those and other new variants.)

"The main message from our research is that someone who has had COVID and then gets vaccinated develops not only a boost in antibody amount, but also improved antibody quality -- enhancing the ability of antibodies to act against variants," said Yang, a professor of medicine in the division of infectious diseases and of microbiology, immunology and molecular genetics at the David Geffen School of Medicine at UCLA. "This suggests that having repeated exposures to the spike protein allows the immune system to continue improving the antibodies if someone had COVID then been vaccinated."

(The spike protein is the part of the virus that binds to cells, resulting in infection.)

Yang said it is not yet known whether the same benefits would be realized for people who have repeated vaccinations but who have not contracted COVID-19.

The researchers compared blood antibodies in 15 vaccinated people who had not been previously infected with SARS-CoV-2, the virus that causes COVID-19, with infection-induced antibodies in 10 people who were recently infected with SARS-CoV-2 but not yet vaccinated. Several months later, the 10 participants in the latter group were vaccinated, and the researchers then reanalyzed their antibodies. Most people in both of the groups had received the Pfizer-BioNTech or Moderna two-dose vaccines.

The scientists evaluated how antibodies acted against a panel of spike proteins with various common mutations in the receptor-binding domain, which is the target for antibodies that help neutralize the virus by blocking it from binding to cells.

They found that the receptor-binding domain mutations reduced the potency of antibodies acquired both by either natural infection or vaccination alone, to about the same degree in both groups of people. When previously infected people were vaccinated about a year after natural infection, however, their antibodies' potency was maximized to a point that they recognized all of the COVID-19 variants the scientists tested.

"Overall, our findings raise the possibility that resistance of SARS-CoV-2 variants to antibodies can be overcome by driving further maturation through continued antigenic exposure by vaccination, even if the vaccine does not deliver variant sequences," the researchers write. They suggest that repeated vaccinations may have the capacity to accomplish the same thing as getting vaccinated after having had COVID-19, although further research will be required to address that possibility.

Read more at Science Daily

Dec 7, 2021

Evidence emerges for dark-matter free galaxies

An international team of astronomers led by researchers from the Netherlands has found no trace of dark matter in the galaxy AGC 114905, despite taking detailed measurements over a course of forty hours with state-of-the-art telescopes. They will present their findings in Monthly Notices of the Royal Astronomical Society.

When Pavel Mancera Piña (University of Groningen and ASTRON, the Netherlands) and his colleagues discovered six galaxies with little to no dark matter, they were told "measure again, you'll see that there will be dark matter around your galaxy." However, after fourty hours of detailed observations using the Very Large Array (VLA) in New Mexico (United States), the evidence for a dark matter-free galaxy only became stronger.

The galaxy in question, AGC 114905, is about 250 million light-years away. It is classified as an ultra-diffuse dwarf galaxy, with the name 'dwarf galaxy' referring to its luminosity and not to its size. The galaxy is about the size of our own Milky Way but contains a thousand times fewer stars. The prevailing idea is that all galaxies, and certainly ultra-diffuse dwarf galaxies, can only exist if they are held together by dark matter.

The researchers collected data on the rotation of gas in AGC 114905 for 40 hours between July and October 2020 using the VLA telescope. Subsequently, they made a graph showing the distance of the gas from the centre of the galaxy on the x-axis and the rotation speed of the gas on the y-axis. This is a standard way to reveal the presence of dark matter. The graph shows that the motions of the gas in AGC 114905 can be completely explained by just normal matter.

"This is, of course, what we thought and hoped for because it confirms our previous measurements," says Pavel Mancera Piña. "But now the problem remains that the theory predicts that there must be dark matter in AGC 114905, but our observations say there isn't. In fact, the difference between theory and observation is only getting bigger."

In their scientific publication, the researchers list the possible explanations for the lack of dark matter one by one. For example, AGC 114905 could have been stripped of dark matter by large nearby galaxies. Mancera Piña: "But there are none. And in the most reputed galaxy formation framework, the so called cold dark matter model, we would have to introduce extreme parameter values that are far beyond the usual range. Also with modified Newtonian dynamics, an alternative theory to cold dark matter, we cannot reproduce the motions of the gas within the galaxy."

According to the researchers, there is one more assumption that could change their conclusions. That is the estimated angle at which they think they are observing the galaxy. "But that angle has to deviate very much from our estimate before there is room for dark matter again," says co-author Tom Oosterloo (ASTRON).

Meanwhile, the researchers are examining a second ultra-diffuse dwarf galaxy in detail. If again observe no trace of dark matter in that galaxy, it will make the case for dark matter poor galaxies even stronger.

Read more at Science Daily

Male spiders are attracted by a female like planets orbiting a star

The tiny male golden orb-weaving spider faces a considerable challenge when searching for a mate. He is a fraction of the size of the massive female, but must carefully enter her web and approach her without being noticed, because the cannibalistic female will kill and eat him if he makes one wrong move on her web. Add to this gamble the competition he faces from other males also on the delicate arena of the web, and you have a complex optimization problem that even human analysts would find daunting. Yet these little spiders barely have what we would recognize as a brain. How then do they manage? This is a question that has captivated Alex Jordan and members of his lab at the Max Planck Institute of Animal Behavior for over a decade. Now, teaming up with researchers from the Weizmann Institute of Science, they are closer to an answer.

The solution appears to lie in animal magnetism, or more correctly, in the effective physical forces that males and females experience on the elastic surface of the spider web. "Our initial concept was to explore the idea that these spiders moving on the web behave like electrons orbiting a nucleus, or planets orbiting a star," says Jordan, who leads the Integrative Behavioral Ecology Lab at the Max Planck Institute of Animal Behavior, and is co-senior author on the study. From this initial idea, a research program was born, leading the two teams to develop a physical model and perform experiments in the Panamanian rainforest.

Competitive web arena

While the details of the precise physics ultimately diverged from both atomic and cosmic levels, the concept proved useful. "Imagine electrons orbiting a nucleus, or a massive star in space, so large that it generates its own gravitational field pulling in objects around it -- the giant, cannibalistic female can be thought of in the same way," says Jordan. "Now imagine smaller planets, satellites, or comets coming near this attractive force -- these are our tiny, brave males." Approach the star (or female) too rapidly, or at the wrong angle, and you risk getting caught up in her attractive pull. On a cosmic scale, this will result in a cosmic collision that vaporizes the planet. For the intrepid male, an incorrect approach means falling into a fatal attraction and ending up as prey.

"Working in the rainforests of Panama, I've seen over-zealous males fall victim to the cannibalistic females many times, especially when they take the wrong path, or approach the female too fast," says Sylvia Garza, co-author of the study, who spent months in Panama as a Master's student recording the behavior of male and female spiders, then using machine-learning approaches to track their every movement.

Vibratory cues


Just as the smaller planets have their own gravitational pull, the males also attract one another -- initially approaching the perceived rival. The males also start to repel each other as they get closer and closer, in this way behaving much more like electrons around a nucleus.

"The motion of these males resembles interactions between particles that attract or repel one another depending on the distance between them," says Amir Haluts, a physicist by training and lead author of the study from the Weizmann Institute of Science. Co-senior author Nir Gov, also from the Weizmann, says: "We use models to map the effective physical forces that males experience, allowing us to explain their motion on the web, as well as contest dynamics of males of different sizes." As the males orbit one another, they will eventually come too close together, crashing into each other in open fighting. All this is played out on the surface of the web, which acts as the conduit for the vibrations males use to communicate, but which can also alert the female to their presence and lead to a fatal attack.

Read more at Science Daily

Gene discoveries give new hope to people who stutter

More than 2.5 million Americans have a chronic condition arising in early childhood that can negatively impact their education, job performance and employability well into adulthood.

There is no known cure, and existing treatments are often minimally effective. Yet for those with persistent, developmental stuttering, there is new hope, thanks to groundbreaking research led by scientists at Vanderbilt University Medical Center in Nashville, Tennessee, and Wayne State University in Detroit, Michigan.

In two papers published this week, Jennifer "Piper" Below, PhD, and Shelly Jo Kraft, PhD, describe a "genetic architecture" for developmental stuttering and report the discovery of new genetic variations associated with the condition.

The researchers said that these findings, which were published in The American Journal of Human Genetics and Human Genetics and Genomics Advances, and studies like them have the potential to identify therapeutic directions that could improve outcomes for people who stutter.

"It's clear that in populations, stuttering is polygenic, meaning that there are multiple different genetic factors contributing to and protecting people from risk," said Below, associate professor of Medicine at VUMC. "That was something that had not been clearly shown before these studies."

The new revelations will have a huge impact on people who stutter and on the parents of children affected by the condition, predicted Kraft, associate professor of Communication Sciences and Disorders and director of the Behavior, Speech & Genetics Lab at Wayne State University.

"It's a piece of themselves that they can then understand," she said, "instead of living a lifetime of experiencing this difference in their speech and never knowing why."

With the help of colleagues in Ireland, England, Israel, Sweden, Australia and throughout the United States, Kraft has collected blood and saliva samples for genetic studies from more than 1,800 people who stutter, including more than 250 families with three generations of stuttering.

But while that effort, called the International Stuttering Project, identified new genetic variations, or variants, associated with developmental stuttering, it was not sufficiently "powered" to reveal the complexity of the condition. There simply were not enough people in the studies.

That's where Below comes in. She utilized a key VUMC resource, BioVU, one of the world's largest repositories of human DNA linked to searchable, electronic health information. BioVU has enabled researchers to conduct GWAS, or genome-wide association studies to probe the genetic underpinnings of a wide range of diseases.

Stuttering, however, is a condition that is rarely mentioned or given a diagnostic code in the medical record. People aren't hospitalized for stuttering. "We had to come up with some clever new ways to try to capture that missing code," Below said.

From confirmed cases of developmental stuttering, the researchers constructed a "constellation" of diagnostic codes for other conditions such as attention-deficit hyperactivity disorder (ADHD) and autoimmune reactions to infections that co-occur with stuttering more frequently than would be expected by chance.

Then, using machine learning techniques, they created an artificial intelligence tool that used the presence of these "phenotypes" recorded in the electronic health record to predict those who were likely to stutter, "even in the absence of having a direct note about their stuttering in their medical record," Below said.

Supported by $3.5 million, five-year grant awarded in 2018 by the National Institute on Deafness and Other Communication Disorders, part of the National Institutes of Health, the researchers demonstrated that their stuttering prediction model positively predicted the presence of stuttering more than 80% of the time.

The research also turned up a stuttering-related gene implicated in autism-spectrum disorder, as well as genetic variants that affect the regulation of sex hormones. The latter finding may help explain why boys are more likely to stutter, and why women who stutter are more likely to recover.

Some correlations between traits may be spurious, Below noted. But if the researchers establish genetic connections between stuttering and other traits such as ADHD, those findings could open up avenues for treating both conditions at the same time, Kraft said.

Read more at Science Daily

Long-range four-stranded DNA structures found to play a role in rare aging disease

A special form of four-stranded DNA, recently seen in human cells, has been found to interact with a gene that causes Cockayne Syndrome when faulty.

As well as the classic double-helix, researchers have recently discovered a whole host of other DNA strand configurations, including quadruple-helix DNA, which forms knot-like structures called G-quadruplexes.

While many of these new DNA configurations have only been observed in cells in dishes, G-quadruplexes have recently been observed in living human cells. However, their possible functions in cells have not been discovered.

Now, researchers from the Molecular Science Research Hub at Imperial College London have observed a protein called Cockayne Syndrome B (CSB) preferentially interacting with one specific type of G-quadruplex. These special G-quadruplexes arise when distant parts of DNA interact, something that researchers thought was impossible to form within cells.

Normally functioning CSB proteins do not cause any ill effects, but mutations of the gene that produce CSB protein can cause the fatal premature ageing disorder Cockayne Syndrome, which kills many sufferers before adulthood.

The team found that CSB proteins with mutations that cause Cockayne Syndrome are no longer able to interact with the long-range G-quadruplexes. While we don't yet know why this might be, the team's results, published today in theJournal of the American Chemical Society, suggest that these long-range DNA G-quadruplexes are specifically linked with the functional role of CSB.

Lead researcher Dr Marco Di Antonio, from the Department of Chemistry at Imperial, said: "Our genomic DNA is more than two metres long, but is compressed into a space only a few microns in diameter. It shouldn't therefore be a surprise that there are ways the long-range looped structures are leveraged to compress DNA in more complex interactions than we imagined.

"There is still so much we don't know about DNA, but our results show that how and where G-quadruplex structures form affects their function, making them more important biologically than previously thought."

DNA strands are incredibly long and are wound in tight structures to fit inside our cells. Previously, researchers had assumed that G-quadruplexes form only from regions of DNA that sit next to each other. However, the team discovered G-quadruplexes that are formed from parts of the DNA strand that are spatially distant one from the other.

It's these G-quadruplexes that specifically interact with the CSB protein. The team shows that CSB could potentially use the G-quadruplexes to link together distant portions of the DNA.

Exactly what the interaction results in is yet to be determined, but previous independent research found that cells without CSB have difficulty processing the DNA around sequences with the potential to form G-quadruplexes.

The Imperial team have now found that the mutated form of CSB that causes Cockayne Syndrome is specifically attracted to G-quadruplexes that link distant DNA portions. This could mean further study of the mutated CSB gene might reveal the specific biological function of these long-range DNA structures.

Next, the researchers want to image the G-quadruplexes and the functional CSB gene bound together to determine exactly what the relationship does: whether the CSB helps the G-quadruplex hold the two distant regions of the DNA together, or whether CSB actually initiates the break-up of G-quadruplexes once they have completed their function, or a combination of both.

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Dec 6, 2021

Migratory birds have lighter-colored feathers

Migratory birds are specially adapted to find their way over extreme distances that represent remarkable tests of endurance. Now, researchers reporting December 6 in the journal Current Biology have discovered an unexpected way that migratory birds keep their cool during such arduous journeys: lighter-colored feathers.

"We found across nearly all species of birds, migratory species tend to be lighter colored than non-migratory species," said Kaspar Delhey of the Max Planck Institute for Ornithology, Seewiesen, Germany. "We think that lighter plumage coloration is selected in migratory species because it reduces the risk of overheating when exposed to sunshine. Lighter surfaces absorb less heat than darker ones, as anybody wearing dark clothes on a sunny day can attest! This would be particularly important for long-distance migrants that undertake extensive flights during which they cannot stop to rest in the shade."

Delhey and colleagues had been studying the effects of climate on bird coloration. Their earlier studies showed that, in general, lighter colored birds are found where temperatures are high and there is little shade. Presumably that's at least in part because the birds' lighter plumage helps to keep them cooler in the hot sun. Around that same time, the researchers came across studies by others showing that some birds fly at much higher altitudes during the day compared to at night.

"Because flying at high altitude is likely costly, these changes required an explanation," Delhey says. "One possibility was that flying higher, where it is colder, would offset the heat absorbed by the plumage when the sun was shining."

If so, they realized, another way to reduce the risk of overheating would be to absorb less solar radiation in the first place. It raised a question: have migratory species evolved lighter feathers?

To find out, they quantified overall plumage lightness (from 0 = black to 100 = white) for all bird species, using bird images from the Handbook of the Birds of the World. Next, they compared the data on coloration with the species' migratory behavior, while controlling for other factors known to effect plumage color.

Overall, the findings show that bird species get increasingly lighter as they migrate more. So, resident birds tend to be darker than short-distance migrants. Short-distance migrants are darker than bird species that travel farther. Delhey said that the one of the biggest surprises was how consistent the effect was across different types of birds. They saw the same pattern in birds large and small. The same held true in waterbirds and land-dwelling birds, too.

The findings are another reminder of the important role of temperature and climate factors more broadly in shaping the evolution of animal coloration. They also have clear implications for understanding the impacts of global warming and potential adaptive evolutionary responses, the researchers say.

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Big gaps in quest to sequence genomes of all animals

Efforts to sequence the genomes of the world's animals tend to focus on those that most resemble humans with the work conducted almost entirely in the Global North, according to an analysis led by Washington State University.

In a paper published in the Proceedings of the National Academies of Sciences, researchers from WSU and Brigham Young University warn that current efforts are overlooking huge swathes of diversity and opportunity.

The analysis found that nearly 3,300 animal species have had their genomes sequenced and assembled, a process that gives organizational context to an organism's DNA. While the rate is picking up, the number is small in comparison to the world's 1.66 million animal species, and vertebrates make up the lion's share of current sequences. They account for 54% of all the assemblies, despite representing only 3.9% of animal species. In contrast, the invertebrates of the Arthropoda phylum, which includes insects and spiders, comprise only 34% of current datasets while representing 78.5% of all species.

"With genome assemblies accumulating rapidly, we want to think about where we are putting our efforts. It's not being spread evenly across the animal tree of life," said lead author Scott Hotaling, a WSU post-doctoral researcher. "Invertebrates are still very underrepresented, which makes sense given that people seem to care more about vertebrates, the so-called 'charismatic megafauna.'"

The family Hominidae, which includes great apes and humans, had the most contiguous genome data assembled, but the human genome is not the longest: that title goes to the Australian lungfish. Of all the genomic data, only five arthropod groups were well represented: bees, butterflies, mosquitoes, fruit flies and ants -- all notable for the utility, or problems, they pose to humans.

"We are interested in ourselves, and that's not necessarily a bad thing," said Paul Frandsen, a corresponding author on the paper and a BYU assistant professor. "But to begin to understand entire ecosystems, we have to start sampling more of the variety of life to gain a clearer picture. Vertebrates are important components of ecosystems, but arguably insects and many other small creatures probably play an even more important role because they're down at the base of the food web."

The authors, Hotaling, Frandsen and WSU associate professor Joanna Kelley, also noted that the vast majority of genetic sequencing work is happening in developed countries often called the Global North because most are located in the Northern Hemisphere. Three countries, the United States, China and Switzerland produce the most. There were even certain proclivities for different regions with North America doing the most sequencing of mammals and insects, Europe of fish and Asia of birds.

In recent years, several large genome sequencing efforts have been announced, including the Earth BioGenome Initiative, which set an ambitious goal to sequence all of eukaryotic life, which includes animals, bacteria and one-celled organisms, within the next 10 years.

The current number of about 3,300 animal genome assemblies as of June 2021 is a big jump in 25 years from when the first animal genome sequence was produced, the Caenorhabditis elegans roundworm in 1998. But the authors calculated that at the current rate of about four genome assemblies per day, the goal of sequencing all eukaryotic life would not be reached until the year 3130.

The researchers propose that one way to help spur more work in this area would be to develop infrastructure and involve more researchers from countries in the Global South, particularly in tropical regions where there also happens to be a lot of animal diversity.

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Trees are biggest methane ‘vents’ in wetland areas – even when they’re dry

Most of the methane gas emitted from Amazon wetlands regions is vented into the atmosphere via tree root systems -- with significant emissions occurring even when the ground is not flooded, say researchers at the University of Birmingham.

In a study published in the Royal Society journal, Philosophical Transactions A, the researchers have found evidence that far more methane is emitted by trees growing on floodplains in the Amazon basin than by soil or surface water and this occurs in both wet and dry conditions.

Methane is the second most important greenhouse gas and much of our atmospheric methane comes from wetlands. A great deal of research is being carried on into exactly how much methane is emitted via this route, but models typically assume that the gas is only produced when the ground is completely flooded and underwater.

In wetland areas where there are no trees, methane would typically be consumed by the soil on its way to the surface, but in forested wetland areas, the researchers say the tree roots could be acting as a transport system for the gas, up to the surface where it vents into the atmosphere from the tree trunks.

Methane is able to escape via this route even when it is produced in soil and water that is several meters below ground level.

This would mean that existing models could be significantly underestimating the likely extent of methane emissions in wetland areas such as the Amazon basin.

To test the theory, the team carried out measurements across three plots on the floodplains of three major rivers in the central Amazon basin. The same trees were monitored at each plot at four time points over the year to capture their response changing water levels associated with the annual flood. Methane emissions were measured using a portable greenhouse gas analyser and then calculations were done to scale the findings up across the Amazon basin.

Overall, the team estimate that nearly half of global tropical wetland methane emissions are funnelled out by trees, with the unexpected result that trees are also important for emissions at times when the floodplain water table sits below the surface of the soil.

Lead author, Professor Vincent Gauci, in the School of Geography, Earth and Environmental Sciences at the University of Birmingham (and the Birmingham Institute of Forest Research), says: "Our results show that current global emissions estimates are missing a crucial piece of the picture. We now need to develop models and methods that take into account the significant role played by trees in wetland methane emission."

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Discovering new drugs with help from Darwinian principles

Our body must constantly defend itself against bacteria and viruses. It generates millions of different antibodies, which are selected to recognise the enemy and trigger the best possible immune response. Scientists use these antibodies to for therapeutic purposes to target proteins and disrupt their harmful. However, identifying the small molecules that will form the basis of the drug is a long and tedious process. Chemists at the University of Geneva (UNIGE), Switzerland, have developed a technique inspired by the theory of Darwinian evolution: amplifying the best combinations and generating diversity allows biology to find solutions to new problems. They have created a new methodology that rapidly generates millions of combinations of small molecules through programmed assembly using DNA-pairing processes, finding the best possible combination to counter a target protein within two weeks. These results, published in the journal Nature Chemistry, will open up a new and untapped space for drug development.

The way drugs work is based on the molecular recognition of a target protein involved in the disease, in order to disarm it. To do this, scientists use high-throughput screening to identify which molecule could become a drug, specifically targeting the protein of interest. Over the last ten years, the technique has been improved by encoding small molecules with DNA tags that simplify their identification, as DNA is easy to decode.

Drawing inspiration from Darwinian evolutionary forces to find efficient assemblies

Today, chemists at the UNIGE have gone one step further, drawing inspiration from Darwin's theories: "Biology always finds a solution to a problem, explains Nicolas Winssinger, professor in the Department of Organic Chemistry at the Faculty of Science, UNIGE, and the corresponding author of the study. This is the principle of natural evolution, which consists of amplifying the best individuals, while generating diversity to adapt and survive changing conditions. That's what we've set up for small molecules." Indeed, the scientists have developed a technology that generates diversity by creating more than 100 million assemblies of molecules via their DNA, which they then select to best match a particular protein.

"We were inspired by the characteristics of antibodies that recognise target proteins and sought to mimic them in the form of simpler molecules to allow them to be assembled in different combinations, directed by DNA sequences," explains Nicolas Winssinger. These combinations are then selected and amplified several times to find the best possible match with the protein to be targeted, all in one to two weeks, compared with months or even a year for traditional high-throughput screening.

A proven, easily reproducible and inexpensive technique


To validate the effectiveness of this methodology, the Geneva team focused on the PD-L1 protein, which protects cancer cells by diverting the immune system. "Thanks to our methodology, we quickly identified an assembly that specifically targets PD-L1, confirming that it works effectively," says Nicolas Winssinger.

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Spaceflight wreaks havoc on liver metabolism

The latest findings of a series of studies on mice that examined harmful effects caused by spending time in space show that gene expression related to liver metabolism is altered in response to the space environment. The benefit of these findings is that it may be possible to offset these changes with dietary supplementation during spaceflight.

Like other inhabitants of this planet, humans have evolved for life on Earth, not life in space or elsewhere. During spaceflight, the human body is exposed to a harmful environment, characterized by null or microgravity and high radiation levels. The liver is affected by spaceflight more than any other organ -- its crucial role in neutralizing harmful substances in the body means that spaceflight places incredible demands on the organ.

"Environmental stressors, such as high radiation and microgravity, induce a state of oxidative stress," explains Professor Iwao Ohtsu. "To deal with reactive oxygen and nitrogen compounds, the liver uses its limited resources, that is, antioxidant sulfur-containing compounds." The research team conducted novel experiments to compare liver gene expression levels between mice exposed to microgravity, mice exposed to simulated gravity on the International Space Station, and mice at ground level on Earth.

Mice that traveled to space and back had a lower antioxidant capacity because they had lower levels of the sulfur-containing compounds (e.g., ergothioneine, cysteine, and glutathione) that play a role in protecting cells by reducing reactive oxygen compounds, which limits free-radical damage. Overall, many indicators of oxidative stress were evident in the livers of these mice. In addition, there was greater expression of genes related to oxidative stress and sulfur metabolism pathways (which deplete levels of sulfur-containing antioxidant compounds) in mice that had been exposed to space.

Some effects, however, only occurred in mice exposed to microgravity. "Consequently, we were able to identify that some aspects of altered liver metabolism are counteracted by exposure to artificial gravity, whereas those caused by other environmental effects could be treated with alternative solutions, such as the addition of dietary supplements to astronauts' diets," says Professor Ohtsu.

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Dec 5, 2021

Giant planets could reach 'maturity' much earlier than previously thought, study reveals

An international team of scientists, in which researchers from the Instituto de Astrofísica de Canarias (IAC) participate together with other institutions from Spain, Italy, Germany, Belgium, UK, and Mexico, has been able to measure the masses of the giant planets of the V1298 Tau system, just 20 million year old. Masses for such young giant planets had not been obtained previously, and this is the first evidence that these objects have already reached their final size at very early stages of their evolution. For this study they have used radial velocity measurements from the HARPS-N spectrographs, at the Roque de los Muchachos Observatory (ORM), and CARMENES, at the Calar Alto Observatory. The results are published today in the journal Nature Astronomy.

The study, led by the IAC researcher Alejandro Suárez Mascareño, reports the measurement of the masses of two giant planets that orbit the young solar-type star V1298 Tau. They were discovered in 2019 by a team lead by Trevor David (JPL) using data from NASA's Kepler space telescope, which allowed the measurement of their sizes, slightly smaller than Jupiter, and of their orbital periods, 24 and 40 days for V1298 Tau b and e, respectively.

"The characterization of very young planets is extraordinarily difficult," says Alejandro Suárez Mascareño, first author of the publication. The parent stars have very high levels of activity and until very recently it was unthinkable to even try ." And he adds: "Only thanks to the combination of detections made with space telescopes, combined with intense radial velocity campaigns from Earth-based observatories and the use of the most advanced analysis techniques, it was possible to begin to see what is happening in such early stages of the evolution of planetary systems ." In fact, for the new measurements of the planetary masses, it was necessary to separate the signals generated by these planets from the signal generated by the star's activity, almost ten times larger.

The study shows that the masses and radii of the planets V1298 Tau b and c are surprisingly similar to those of the giant planets of the Solar System or in other old extra-solar systems. These measurements, which are the first to be obtained of such young giant planets, allow us to test current ideas about the formation of planetary systems. "For many years, theoretical models have indicated that giant planets begin their evolution as bodies with a larger size, and later they contract over hundreds millions or even billions of years '', explains Víctor J. Sánchez Béjar, researcher at the IAC and co-author of the work. "We now know that they can actually reach a size similar to that of the planets in the Solar System in a very short time," he notes.

The study of young systems gives researchers clues about what happened during the infancy of our solar system. "We still do not know if V1298 Tau is a normal case and its evolution is similar to that of most planets or if we are facing an exceptional case; if this were the normal scenario, it would mean that the evolution of planets like Jupiter and Saturn could have been very different from what we think ," comments Nicolas Lodieu, a researcher at the IAC and also a co-author of the work. The results of this work thus help to build a more solid idea of the early evolution of planetary systems like ours.

To achieve the measurement of these masses, the study has required a significant observational effort and the collaboration of multiple observatories and institutions from different countries. It has been necessary to combine radial velocity measurements from various instruments such as the high-resolution HARPS-N ultrastable spectrograph, installed at the Roque de los Muchachos Observatory's Telescopio Nazionale Galileo (TNG); the CARMENES high resolution spectrograph, installed at the Calar Alto observatory; the HERMES spectrograph, installed on the Mercator telescope, also at the ORM; and the SES spectrograph, installed in the STELLA telescope at the Teide Observatory. Observations taken from the Las Cumbres Observatory, a network of telescopes located around the world, have been used to continuously monitor the variations of the star's activity.

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